Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq142 107 5e-18 seq25 95.1 3e-14 seq23 95.1 3e-14 seq32 93.3 1e-13 seq4 87.8 4e-12 >seq142 Length=44629 Score = 107 bits (118), Expect = 5e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||| | ||||||||| ||||| ||||| ||||||| || ||||||| || ||| Sbjct 44504 CGGAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTT 44563 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||| |||||||||||||||||||||||||| || || ||||| Sbjct 44564 CGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTG 44607 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| | ||||| || || ||| Sbjct 44493 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCGGAC 44434 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| |||||| || Sbjct 44433 ACTATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAG 44374 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||||||| | ||||| || | ||| | |||| ||||| | Sbjct 44373 CGCCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGCACTCTCTCCGACTACAATATT 44314 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| ||||| || |||||| | |||||||| Sbjct 44313 CAGAAGGAGTCGACTCTGCATCTTGTTCTCAGACTTCG 44276 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355 || |||||||||||||||||| ||||||| ||| | ||| || | || |||||| ||||| Sbjct 44598 CTCATCTTCGCCGGAAAGCAGCTGGAAGACGGACGAACTCTGTCTGACTACAACATCCAG 44539 Query 206356 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| ||||||||| | |||| || Sbjct 44538 AAGGAGTCCACTCTCCACCTTGTTCTCCGACTCCG 44504 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||| | |||||| || ||||| ||||| ||||| | ||| ||||| | | ||| Sbjct 44276 CGAAGTCTGAGAACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTG 44335 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | || ||||| |||||||||||||||||||| || || ||||| Sbjct 44336 CGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTG 44379 >seq25 Length=137175 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || |||||||| | || ||||| || ||||| | || Sbjct 84236 CAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCCTCCGACACCATTGACAA 84177 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || || || ||| |||||| ||| | || ||||| Sbjct 84176 CGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGATCTT 84117 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | || || || | || | ||||||||||| ||||||| ||||| Sbjct 84116 CGCCGGCAAGCAGCTCGAGGACGGCCGAACGCTCTCCGATTACAACATCCAGAAGGAGTC 84057 Query 206364 TACTCTTCACCTTGT 206378 || || ||||| || Sbjct 84056 CACCCTCCACCTCGT 84042 >seq23 Length=147171 Score = 95.1 bits (104), Expect = 3e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||||| |||||||| | ||| ||| | || ||| | | ||| || | Sbjct 139755 GCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTAC 139696 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | ||| || || | ||| | || | ||||| || ||||| |||| ||| Sbjct 139695 CAGAGCTTTTGAGCCTTGATGGTGCGACGGGCCTTGCCTTCCTTCTCGTACTTCTCGTAG 139636 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 ||| | ||||| |||| ||||| | ||| | |||||||| || || || || | Sbjct 139635 AGGGCCTCGAACTCCTCGCCGTACACGTCGGCGAGACCGGGGCACTCGTTGGGGCACATC 139576 Query 173287 AGACTCCAATTTCC-ATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 173345 ||| ||| | || || || ||||| ||||||||||| | ||||| | |||| | || Sbjct 139575 AGAGACCACTCGCCGTTCTGT-TCGACTCTCTTCATGAACAAGTCGGGAATCCAGAGAGC 139517 Query 173346 GTAGAA 173351 |||||| Sbjct 139516 GTAGAA 139511 >seq32 Length=118755 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || || || | || || ||| ||| ||||| |||| Sbjct 111457 AAGACTCTCACCGGCAAGACTATTACCCTCGAGGTCGAATCTTCCGACACCATCGACAAT 111398 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || ||| |||||| || | || |||||| Sbjct 111397 GTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCTGATCTTC 111338 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | ||| || ||| |||||| ||||||| ||||| Sbjct 111337 GCCGGCAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACAACATCCAGAAGGAGTCC 111278 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 111277 ACTCTCCACCTCGT 111264 >seq4 Length=308026 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || ||||| || ||| Sbjct 60338 CAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCCGAC 60397 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| |||||| || Sbjct 60398 ACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAG 60457 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || ||||| | ||| | | || |||||| || Sbjct 60458 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTTTCGGACTACAACATC 60517 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 60518 CAGAAGGAGTCCACCCTCCACCTCGT 60543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181809186025407