Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq23 152 7e-31 seq35 132 7e-25 >seq23 Length=147171 Score = 152 bits (168), Expect = 7e-31 Identities = 206/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 |||||| || ||| ||||| || ||||||| ||||| || |||||||| || | Sbjct 139103 ATGTCGGAGAAGTACTTCACACATGCCTCGCCCACTCTCTTCAACGCCGGCACACCCAAC 139162 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 || ||| || |||||||| ||| | |||||||| ||| || ||||| || ||||| Sbjct 139163 CCTCAGCTGTCTTCGTGCTTCCTGGTCACCATGAAGGACGACTCCATCGAAGGTATCTAC 139222 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 ||||| |||||| ||||| | || |||| | ||||| || || ||| | | Sbjct 139223 GACACCCTCAAGACCTGCGCCATGATAAGCAAGACTGCCGGTGGTATTGGTCTCAACATT 139282 Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTT 260134 ||| | || | | | ||| ||||| | ||||||||||||||| |||||||| || Sbjct 139283 CACTGCATCCGTGGCACTGGCTCCTACATCGCGGGCACCAACGGCTTCTCCAACGGGATT 139342 Query 260135 GTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||||| || || | ||| |||| || || ||||||||||| Sbjct 139343 GTGCCCATGCTGCGAGTCTACAACAACACCGCTCGATACGTCGACCA 139389 Score = 102 bits (112), Expect = 1e-15 Identities = 292/448 (65%), Gaps = 20/448 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| |||||||||||| |||| | || || |||||| | ||| || Sbjct 139391 GGTGGCAACAAGCGTCCCGGCGCCTTTGCCATCTACGTTGAGCCCTGGCACTCTGACGTC 139450 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || |||||| |||||||||||||||| |||| ||| || || | Sbjct 139451 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGA----GGAGGTCCGAGCTCGAGA 139506 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCG- 261966 | ||||| |||| || |||| |||| |||| ||| | | | || | || Sbjct 139507 G--CTCTTCTACGCTCTCTGGATTCCCGACTTGTTCATGAAGAGAGTCGA-ACAGAACGG 139563 Query 261967 CGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGC 262026 ||| ||||| || | ||||| |||| ||||| || ||| || |||| || Sbjct 139564 CGAGTGGTCTCTGATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACGTGTACGGCGAGGA 139623 Query 262027 CTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGC 262086 || || |||||||| ||| | || |||||| || | Sbjct 139624 GTTCGAGGCCCTCTACGAGAAGTACGAGAAGGAAGG-----CAAGGCCCGTCGCACCATC 139678 Query 262087 ACGAC-----AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTAC 262141 | | | || |||||| ||||| ||| |||||| | |||||| |||| |||| | Sbjct 139679 AAGGCTCAAAAGCTCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGCAATCCCTTC 139738 Query 262142 ATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACA 262201 ||| ||||||||||||| | ||||| | ||||||| ||||||| || |||| | | Sbjct 139739 ATGCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCA-A 139797 Query 262202 GAG-GCCAACCTGTGCACCGAGATCGTC 262228 | | ||||| ||||||| |||||| || Sbjct 139798 GTGCTCCAACTTGTGCACTGAGATCATC 139825 >seq35 Length=115666 Score = 132 bits (146), Expect = 7e-25 Identities = 197/267 (74%), Gaps = 13/267 (5%) Strand=Plus/Plus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || |||||||||||||| || ||||| ||||| |||||||| || | ||| | | | Sbjct 64402 GAGAACATCCACTCTGAGACATACTCTCTCCTCATCGACACATATATTCGCGACTCTG-C 64460 Query 1456075 GAGAAG-GACCACCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAGGCCG 1456132 | | | || |||| || ||||||||| || | || |||| || |||||| ||| Sbjct 64461 GCAACGCGAGTACCTGTTCGACGCCATCGAGACCATTCCCGTCGTCAAGCAAAAAG-CCG 64519 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCC--TCGACACTTTGCCGAGCGGCTCGTC 1456190 | ||||| || ||||||| | || || |||||| ||||| ||||| || | Sbjct 64520 AGTGGGCTATCCGATGGATCAGC---GACACCCAGTCGACA-TTTGCTGAGCGCCTGATT 64575 Query 1456191 GGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCT 1456248 | |||||| || |||||||||||||| ||||| ||| || |||| ||||||||||||| Sbjct 64576 GCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGTT-TGCGTCCATCTTTTGGCT 64634 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||| || |||||||| || Sbjct 64635 GAAGAAGCGCGGTCTGATGCCCGGCCT 64661 Score = 104 bits (114), Expect = 3e-16 Identities = 170/240 (71%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||| |||||||| || ||||| ||||| || || |||||||| || ||| ||| Sbjct 64078 GCAGATCTGGCAAATGTAC-AAGAAGGCAGAGGCATCGTTCTGGACCGCTGAAGAGATCG 64136 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGG-TGTC--GCTGAGCGACGACGAGCGCCATTTCA 1455888 |||| | |||| | | | |||| | | ||||| |||| |||||||||| |||| Sbjct 64137 ACCTGTCCAAGGACATGCACGATTGGGATAACCGGCTGAACGACAACGAGCGCCACTTCA 64196 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 ||| |||||||||||||| ||| || || || || || || |||||||| | | Sbjct 64197 TCAGCCACGTCCTCGCCTTCTTT-GCTGCTTCAGACGGAATTGTCAATGAGAACCTTGTC 64255 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | ||||| ||| | ||||| || | || ||||| ||||||||| Sbjct 64256 GAGCGATTCAGTTCCGAGGTACAAGCAGCTGAGGCCCGATGCTTCTACGGCTTCCAGATC 64315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177737221440254