Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq32 143 3e-29 seq23 132 5e-26 seq119 122 9e-23 seq4 118 1e-21 >seq32 Length=118755 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||||| ||||| || ||||||||||||| Sbjct 111246 CCACCACGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 111305 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| |||||||| ||||| || || |||| ||||| || || || || Sbjct 111306 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 111365 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| ||| | |||||||| ||||| || Sbjct 111366 ATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACC 111425 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || || ||||| | ||| || ||||| |||||||| Sbjct 111426 TCGAGGGTAATAGTCTTGCCGGTGAGAGTCTTTACGAAGATTTGCAT 111472 >seq23 Length=147171 Score = 132 bits (146), Expect = 5e-26 Identities = 284/421 (67%), Gaps = 5/421 (1%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 |||||||||||| |||| || || || || || |||||| |||||| ||||| ||| | Sbjct 139028 CAACACATGCTGATGCGTGTCGCCGTCGGTATCCACGGCCGAGACATCGACGCTGCCATC 139087 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||||| ||| | || || || || |||||||| | || | Sbjct 139088 GAGACATACAACCTGATGTCGGAGAAGTACTTCACACATGCCTCGCCCACTCTCTTCAAC 139147 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || |||||| | ||||| |||| ||||| || || | |||||| || ||| | Sbjct 139148 GCCGGCACACCCAACCCTCAGCTGTCTTCGTGCTTCCTGGTCACCATGAAGGACGACTCC 139207 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802 ||||| || || ||| |||| || | || ||||||| || ||| | ||| || Sbjct 139208 ATCGAAGGTATCTACGACACCCT-CAAGACCTGCGCCATGATAAGCAAGACTGCCGGTGG 139266 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||||| ||| | || | | || | || || | ||||| | ||||||||| Sbjct 139267 TATTGGTCTCAACATTCACTGCATCCGTGGCACTGGCTCCTACATCGCGGGCACCAACGG 139326 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 ||| ||| | | ||||||| |||| || | ||| ||| | | ||| | || || Sbjct 139327 CTTCTCCAACGGGATTGTGCCCATGCTGCGAGTCTACAACAACACCGCTCGATACGTCGA 139386 Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 ||| || || ||||| |||||| ||||||||| | ||||| |||||| | || Sbjct 139387 CCAAGGTGGCAACAAGCGTCCCGGCGCCTTTGCCATCTACGTTGAGCCCTGGCACTCTGA 139446 Query 7980 C 7980 | Sbjct 139447 C 139447 >seq119 Length=54761 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| || |||||||||||| || ||| | ||| || Sbjct 54760 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCA 54701 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || ||||||| || || || || || || ||||| || || || ||| Sbjct 54700 AGCTGCTTGCCGGCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 54641 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || || || |||||||| ||||| || Sbjct 54640 ATCTTGGTCTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTG 54581 Query 134685 CCGGTTAAAGTTTTAAC 134701 ||||| || || ||||| Sbjct 54580 CCGGTCAAGGTCTTAAC 54564 >seq4 Length=308026 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || ||||| ||||| || ||||||||||| || || | Sbjct 60552 AGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGG 60493 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || |||| ||||| || || || || ||||| || Sbjct 60492 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCC 60433 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| ||||| || Sbjct 60432 TTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTG 60373 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || | || || |||||||| ||||| Sbjct 60372 ATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 60335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505393554492840