Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq23 123 2e-23 seq142 118 9e-22 seq32 116 3e-21 >seq23 Length=147171 Score = 123 bits (136), Expect = 2e-23 Identities = 318/482 (66%), Gaps = 7/482 (1%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || ||| |||| ||||| || |||||| ||||||||||||| |||| |||||| || Sbjct 139597 GGGGCACTCGTTGGGGCACATCAGAGACCACTCGCCGTTCTGTTCGACTCTCTTCATGAA 139538 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 ||| || || | ||| | ||||| || || |||| |||| ||| || | || Sbjct 139537 CAAGTCGGGAATCCAGAGAGCGTAGAAGAGCTCTCGAGCTCGGACCTCCTCCTTGCCGTG 139478 Query 131722 AAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | || | | | || || || | ||| | |||||||| || | || | || Sbjct 139477 GTTCTTGCGGAGGTCGAGGAACTCGAAGACGTCAGAGTGCCAGGGCTCAACGTAGATGGC 139418 Query 131782 CATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | ||||| ||| || || ||||| | || | ||| | |||||||||| || Sbjct 139417 AAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACGTATCGAGCGGTGTTGTTGTAGAC 139358 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 |||| ||||||| | | ||||||| | || ||||||| | |||||| |||| | Sbjct 139357 TCGCAGCATGGGCACAATCCCGTTGGAGAAGCCGTTGGTGCCCGCGATGTAGGAGCCAGT 139298 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 | | | ||| ||||| |||||| |||||||| ||| | || || | ||||| Sbjct 139297 GCCACGGATGCAGTGAATGTTGAGACCAATACCACCGGCAGTCTTGCTTATCATGGCGCA 139238 Query 131959 TTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCA 132018 | | || |||| ||||||||||| | | ||| | ||| ||| | ||||| Sbjct 139237 GGTCTTGAGGGTGTCGTAGATACCTTCGATGGAGTCGTCCTTCATGGTGACCAGGAAGCA 139178 Query 132019 AGAGGACAACTGTTGGTGAAATGTGCCGGC--TGAAAACAATGTGGGGCTGGCGTGTGTA 132076 || |||| ||| ||| ||||||||| |||| | | ||||| ||| ||||| Sbjct 139177 CGAAGACAGCTGAGGGTTGGGTGTGCCGGCGTTGAAGAGA--GTGGGCGAGGCATGTGTG 139120 Query 132077 AA 132078 || Sbjct 139119 AA 139118 >seq142 Length=44629 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||||||||||||| | |||| ||||||| ||||| || ||| Sbjct 44300 GTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCGTCTTCAAGCTGCTTTCCG 44359 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| |||||||| ||||| || | ||||| || || ||||||| | || Sbjct 44360 GCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTG 44419 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | || || ||||| || || || | ||||| ||||| || Sbjct 44420 ACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 44479 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 44480 TTGACGAAGATCTGCATA 44497 >seq32 Length=118755 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||||| |||| |||| |||||||| || ||| Sbjct 111276 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCGAGCTGCTTGCCG 111335 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || |||||||| ||||| || | |||||| || || ||||||| | || Sbjct 111336 GCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTG 111395 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||| || || || || |||| ||||| || ||||| Sbjct 111396 ACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGTGAGAGTC 111455 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 111456 TTTACGAAGATTTGCAT 111472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424930427792904