Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq23 179 5e-40 seq35 96.9 4e-15 >seq23 Length=147171 Score = 179 bits (198), Expect = 5e-40 Identities = 553/845 (65%), Gaps = 23/845 (3%) Strand=Plus/Minus Query 111245 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAG 111304 ||||| ||||| ||||| |||||| | | |||| || | || || || || ||| Sbjct 139866 GCCAAGTTGCAGACAGCGACCTCATCAGGAGCACTGTATTCGATGATCTCAGTGCACAAG 139807 Query 111305 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTG 111364 ||||| | ||| || || || | ||||| ||||| ||| |||| || |||||| Sbjct 139806 TTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTG 139747 Query 111365 TAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATC 111423 ||||||||| |||| | || ||||| ||||| | | ||| || || | ||| | | | Sbjct 139746 TAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCTTT 139687 Query 111424 GGCGGCTGGTACAATG--GCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 | | || | ||| ||| || || | || ||| ||||||||| ||||||||| Sbjct 139686 TGAGCCTTG----ATGGTGCGACGGGCCTTGCCTTCCTTCTCGTACTTCTCGTAGAGGGC 139631 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || |||||||| || | |||||| |||||| || || || || || | ||||| Sbjct 139630 CTCGAACTCCTCGCCGTACACGTCGGCGAGACCGGGGCACTCGTTGGGGCACATCAGAGA 139571 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| | || | || || | ||||||||| | ||| |||||||| || | | || Sbjct 139570 CCACTCGCCGTTCTGTTCGACTCTCTTCATGAACAAGTCGGGAATCCAGAGAGCGTAGAA 139511 Query 111601 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660 ||| |||| | || |||| || | || ||||| || | || |||||||| | Sbjct 139510 GAGCTCTCGAGCTCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 139451 Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CC 111714 || || | |||||| ||||||| |||| || | | || ||||| || Sbjct 139450 GACGTCAGAGTGCCAGGGCTCAACGTAGATGGCAAAGGCGCC---GGGACGCTTGTTGCC 139394 Query 111715 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATC 111774 | |||| | || || || || ||| ||| | || || ||||| || | ||| || | Sbjct 139393 ACCTTGGTCGACGTATCGAGCGGTGTTGTTGTAGACTCGCAGCATGGGCACAATCCCGTT 139334 Query 111775 TGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGC 111832 || || || || ||| ||| || ||| | || | | | || |||| Sbjct 139333 GGAGAAGCCGTTGGTGCCCGCGATGTAGGAG--CCAGTGCCACGGATGCAGTGAATGTTG 139276 Query 111833 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 111892 | |||||||| || || ||| || || || | | || || | |||||| Sbjct 139275 AGACCAATACCACCGGCAGTCTTGCTTATCATGGCGCAGGTCTTGAGGGTGTCGTAGATA 139216 Query 111893 CCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 111952 || | ||| ||||| ||||| ||| || |||||||| |||| ||| || | ||| Sbjct 139215 CCTTCGATGGAGTCGTCCTTCATGGTGACCAGGAAGCACGAAGACAGCTGAGGGTTGGGT 139156 Query 111953 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTC 112011 || || || |||||||| || || | || || |||| ||| | | |||||| || Sbjct 139155 GTGCCGGCGTTGAAGAGAGTGGGCGAGGCATGTGTGAA-GTACTTCTCCGACATCAGGTT 139097 Query 112012 GTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAA 112071 ||||||||| | | ||| || |||||| |||||||| |||| ||||| ||||| | Sbjct 139096 GTATGTCTCGATGGCAGCGTCGATGTCTCGGCCGTGGATACCGACGGCGACACGCATCAG 139037 Query 112072 CATGT 112076 ||||| Sbjct 139036 CATGT 139032 >seq35 Length=115666 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || || || |||||| ||| || ||||| |||||| || || Sbjct 64716 GGCAAAGTCGGTGTGCAGGCCTTCGTCTCGGCTAATCAGCTCATTCGAGAAGGTCAGGCC 64657 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||| ||||| |||||||||| |||| | || | |||| || || || |||||||||| Sbjct 64656 GGGCATCAGACCGCGCTTCTTCAGCCAAAAGATGGACGCA-AACGAGCCAGAGAAGAAGA 64598 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 | ||||| || ||||| |||| ||||| || || || Sbjct 64597 TGCCCTCGACGGCAGCAAAGGCAATCAGGCGCTCAGCAAA 64558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025978743200