Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq23 185 1e-41 seq35 111 2e-19 >seq23 Length=147171 Score = 185 bits (204), Expect = 1e-41 Identities = 685/1059 (65%), Gaps = 37/1059 (3%) Strand=Plus/Minus Query 118525 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAG 118584 |||| |||||||| | |||||||| ||||| || || || | | || |||||| || Sbjct 140072 CATCGGCGAGACCGTTGACACCGATACCAATGGGACGGTGGCGGAAGTTGGACTTCTTAG 140013 Query 118585 CGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 118641 | ||| ||||| || | || | ||||| | | | || | || | ||||| Sbjct 140012 C---CTCGGGAACGGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTGCCGCAGACAA 139956 Query 118642 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC---TTCATTGACAT 118698 |||| |||| ||||| ||||| | | | || | |||| || | || ||| | | Sbjct 139955 CCTTGGTGACCTCATGGAGCTTCTTGAAGTCGTATGTGCGGGTGTTGGTTTGGTTGTCGT 139896 Query 118699 ACTT-----AGGA----AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 118749 | || |||| ||||| || |||| || || |||| | |||||| | Sbjct 139895 AGTTGATGTAGGAGGGGAGGGCCATGCTAGCCAAGTTGCAGACAGCGACCTCATCAGGAG 139836 Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 || |||| || || || || ||||||||||| || | ||| ||||| || | |||||| | Sbjct 139835 CACTGTATTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATGGTACCGAGGTTCTTCT 139776 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 | || ||||| ||| || |||||||| |||||| | || | || ||||| || | Sbjct 139775 GGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCT 139716 Query 118870 GGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGG--CTCGCCC 118927 ||| || ||| || || | ||||| | ||| | ||| || || || ||| Sbjct 139715 GGGCCTCGAGGATGGCGTACCAGAGCTTTTGAGCCTTGATGGTG-CGACGGGCCTTGCCT 139657 Query 118928 CTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC---CACGGCCTCTGAGAG 118984 |||| |||||||| ||||||||| || ||||| || || |||| || | ||| Sbjct 139656 TCCTTC-TCGTACTTCTCGTAGAGGGCCTCGAACTCCTCGCCGTACACG---TCGGCGAG 139601 Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044 || || || | ||||| | |||||||| | || || || || | |||||| Sbjct 139600 ACCGGGGCACTCGTTGGGGCACATCAGAGACCACTCGCCGTTCTGTTCGACTCTCTTCAT 139541 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104 ||| | ||| || |||||||| || ||||||| || ||| || | || || | || Sbjct 139540 GAACAAGTCGGGAATCCAGAGAGCGTAGAAGAGCTCTCGAGCTCGGACCTCCTCCTTGCC 139481 Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164 || || || | || | || || | || || | |||||| || || | ||| | Sbjct 139480 GTGGTTCTTGCGGAGGTCGAGGAACTCGAAGACGTCAGAGTGCCAGGGCTCAACGTAGAT 139421 Query 119165 CGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAA 119221 || | | || ||| ||| | |||| || || | || ||| ||| | Sbjct 139420 GGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACGTATCGAGCGGTGTTGTTGTA 139361 Query 119222 TACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGAC 119279 || || ||||| || | || || | ||| ||| || || ||| ||| || ||| | Sbjct 139360 GACTCGCAGCATGGGCACAATCCCGTTGGAGAAGCCGTTGGTGCCCGCGATGTAGGAGCC 139301 Query 119280 TTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 119339 | || | | || ||| |||| | ||||||||| || || ||| || Sbjct 139300 --AGTGCCACGGATGCAGTGAATGTTGAGACCAATACCACCGGCAGTCTTGCTTATCATG 139243 Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399 ||||| | |||| || ||||||| || ||||| ||||| |||| | | || ||| Sbjct 139242 GCGCAGGTCTTGAGGGTGTCGTAGATACCTTCGATGGAGTCGTCCTTCATGGTGACCAGG 139183 Query 119400 AAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 ||||| |||| ||||| ||||||| || |||||||||||||| || | || || Sbjct 139182 AAGCACGAAGACAGCTGAGGGTTGGGTGTGCCGGCGTTGAAGAGAGTGGGCGAGGCATGT 139123 Query 119460 ATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 |||| ||| | | |||||| || ||| ||||| | | | ||| |||||| || Sbjct 139122 GTGAA-GTACTTCTCCGACATCAGGTTGTATGTCTCGATGGCAGCGTCGATGTCTCGGCC 139064 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 ||| ||||||| | ||| ||||| | ||||| ||| || Sbjct 139063 GTGGATACCGACGGCGACACGCATCAGCATGTGTTGCGG 139025 >seq35 Length=115666 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || || ||||| ||| || || |||||||||||| ||| || Sbjct 64716 GGCAAAGTCGGTGTGCAGGCCTTCGTCTCGGCTAATCAGCTCATTCGAGAAGGTCAGGCC 64657 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| ||||| |||||||||| ||| || || | ||| ||||||||||||||||| Sbjct 64656 GGGCATCAGACCGCGCTTCTTCAGCCAAAAGATGGACGCAAACGAGCCAGAGAAGAAGAT 64597 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| || || || |||| || ||||||||||| Sbjct 64596 GCCCTCGACGGCAGCAAAGGCAATCAGGCGCTCAGCAAA 64558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429270752520