Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq142 141 3e-28 seq3 104 7e-17 seq452 100 9e-16 seq4 100 9e-16 >seq142 Length=44629 Score = 141 bits (156), Expect = 3e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | ||| ||||||||||| ||||| ||||| || |||||||| || || || Sbjct 44269 ACCTCCACGAAGTCTGAGAACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGA 44328 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || |||||||| || ||||| || ||||| || || || || || ||||| Sbjct 44329 GAGAGTGCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGG 44388 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || || || | || || | || || Sbjct 44389 AATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATAGTGTCCGAGGACTCGAC 44448 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || | ||||| ||||| || || || || || |||||||| Sbjct 44449 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 44496 Score = 100 bits (110), Expect = 9e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | || |||||||| || ||||| ||||| || || || || || || Sbjct 44494 CATACCACCACGGAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 44553 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||||| || ||||| || || ||||| || ||||| || || || || || || Sbjct 44554 AGACAGAGTTCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGG 44613 Query 140627 AGGAATTCCTTCTTT 140641 |||||| || || || Sbjct 44614 AGGAATGCCCTCCTT 44628 >seq3 Length=326586 Score = 104 bits (114), Expect = 7e-17 Identities = 139/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 349226 TATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGT 349285 || || |||||||| || ||||||||||| ||||| || | || || || || || ||| Sbjct 1014 TACTCATGTGTTGCCGTCTGGCAAAATGACCGTGTCGAGGTCATCGCCAACGACCAGGGT 955 Query 349286 AACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCT 349345 ||| |||| || || |||||||| || || ||||| || |||||| |||| ||||| | Sbjct 954 AACCGAACTACTCCCTCATACGTCGCCTTCACCGACACCGAGCGTCTGATCGGTGACGCC 895 Query 349346 GCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATT 349405 || || || || | || || || | || || ||||| || || ||||| || || Sbjct 894 GCCAAGAACCAGACCGCGATGAACCCCCACAACACCGTTTTCGACGCCAAGCGTCTCATC 835 Query 349406 GGTAG-AAGTTT 349416 || | |||||| Sbjct 834 GGCCGCAAGTTT 823 >seq452 Length=4188 Score = 100 bits (110), Expect = 9e-16 Identities = 449/707 (64%), Gaps = 6/707 (1%) Strand=Plus/Plus Query 349226 TATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGT 349285 || || |||||||| || ||||||||||| | ||| || | || || || | || ||| Sbjct 3155 TACTCGTGTGTTGCCGTCTGGCAAAATGACCATGTCGAGGTCATCGCCAACGCCCAGGGT 3214 Query 349286 AACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCT 349345 ||| |||| || || |||||||| || || ||||| || |||||| |||| ||| | | Sbjct 3215 AACCGAACCACTCCCTCATACGTCGCCTTCACCGACACCGAGCGTCTGATCGGTCACGCC 3274 Query 349346 GCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATT 349405 || | || || | || || | | || || || || || || ||||| || || Sbjct 3275 GCCCAGAACCAGACCGCGATGAACCTCCACAACACCGTCTTCGACGCCAAGCGTCTCATC 3334 Query 349406 GGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTT 349465 || | | ||| | ||||| || || || | || || | || || | || Sbjct 3335 GGCCGCAAGTTTACAGACAACGAAGTCCAGTCCGACATGAAGCACTGGCCCTTCAAGGTC 3394 Query 349466 GTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGA-ACAAAAACA 349524 | ||| | | || || || || |||| || | || || | || || || Sbjct 3395 ATCGACCAAGGCAG---CAAGCCCATAATCCAGGTCGAGTCCAAGGGCAAGACCAAGAC- 3450 Query 349525 ATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGC 349584 || ||| || || || || | ||||| | || ||| || | || || || Sbjct 3451 CTTCACACCGGAGGAGATCTCCGCCATGGTCCTCACCAAGATGCGCGAGACCGCAGAGGC 3510 Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644 || | |||| || || | || || || | || || || ||||| || || || | Sbjct 3511 CTAGCTCGGTGGCACCGTCAAGGACGCCGTGGTAACAGTCCCCGCCTACTTCAACGACTC 3570 Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704 ||||| || || | || || |||| |||||| || | ||||| | | || || Sbjct 3571 GCAGCGACAGGCCACCTAGGACGCAGGCACCATTGCCGGTCTTAATGTCATGCGCATCAT 3630 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 || || |||| ||||| || || || || || || || || | | | || || || Sbjct 3631 CAACGAGTCCACCGCTGCCGCCATCGCCTACGGTCTCGACAAGAAGGGCGAGGGCGAGAA 3690 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 || | || || || ||| | || || || || || ||||| || || || || | || Sbjct 3691 GAACGTCCTCATCTTCGATCTCGGAGGAGGCACCTTCGATGTTTCGCTCCTCACCATCGA 3750 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 ||||| || || || || || || || || ||||| || || | ||||| || || || Sbjct 3751 GGAGGGCATCTTCGAGGTCAAGGCCACCGCCGGTGACACCCACTTGGGTGGTGAGGACTT 3810 Query 349885 TGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 || ||||| ||||| || ||||| | |||| ||||| |||| Sbjct 3811 TGCCAATCGCCTCGTCAACCACTTTGTCCAGGAATCCAAGCG-CAAG 3856 >seq4 Length=308026 Score = 100 bits (110), Expect = 9e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || || Sbjct 60562 ACCACCACGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 60503 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || || ||||| || || || || || ||||| Sbjct 60502 AAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGG 60443 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || ||||| || || | || || | || || Sbjct 60442 AATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCCAC 60383 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || ||||||||||| Sbjct 60382 CTCGAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 60335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515239509310901