Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq23 268 1e-66 seq35 120 3e-22 >seq23 Length=147171 Score = 268 bits (296), Expect = 1e-66 Identities = 524/767 (68%), Gaps = 18/767 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTACGA 53253 ||||| |||||| | ||||||||||| ||| | |||| || | ||||| ||| | Sbjct 139040 ATGCGTGTCGCCGTCGGTATCCACGGCCGAGACATCGACGC-TGCCATCGAGACATACAA 139098 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | | ||| | |||||||| || || ||| |||| || || |||||||| || || Sbjct 139099 CCTGATGTCGGAGAAGTACTTCACACATGCCTCGCCCACTCTCTTCAACGCCGGCACACC 139158 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 |||||||| |||| ||||||||||| | |||||||| ||||| ||||| || || Sbjct 139159 CAACCCTCAGCTGTCTTCGTGCTTCCTGGTCACCATGAAGGACGACTCCATCGAAGGTAT 139218 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 |||||| || |||||| || ||| || |||| | |||||||| ||| || | Sbjct 139219 CTACGACACCCTCAAGACCTGCGCCATGATAAGCAAGACTGCCGGTGGTATTGGTCTCAA 139278 Query 53434 C-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | | | | |||||| | ||| | ||| ||| || |||||| || || | | Sbjct 139279 CATTCACTG-CATCCGTGGCACTGGCTCCTACATCGCGGGCACCAACGGCTTCTCCAACG 139337 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || ||||| ||||| || |||| ||||||||| || || |||||| |||| ||||| Sbjct 139338 GGATTGTGCCCATGCTGCGAGTCTACAACAACACCGCTCGATACGTCGACCAAGGTGGCA 139397 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||||||| | ||||| |||||| | ||| | | |||| Sbjct 139398 ACAAGCGTCCCGGCGCCTTTGCCATCTACGTTGAGCCCTGGCACTCTGACGTCTTCGAGT 139457 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | ||||| || || ||| || || | || ||| | || || || || || ||| Sbjct 139458 TCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGAGCTCGAGAGCTCTTCTAC- 139516 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 ||||| |||||||| ||| | |||||| | | || || || ||| ||||||| ||| Sbjct 139517 GCTCTCTGGATTCCCGACTTGTTCATGAAGAGAGTCGAACAGAACGGCGAGTGGTCTCTG 139576 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 |||||||| |||||||||||||| ||| | || ||||| |||||||| | | | Sbjct 139577 ATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACGTGTACGGCGAGGAGTTCGAGGCCCTC 139636 Query 53792 TATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 || || |||| | || ||| ||| || | ||||||| | || Sbjct 139637 TACGAGAAGTACGAGAAGGAAGGCAAGGCCCGTCGCACCA------TCAAGGCTCAAAAG 139690 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| | || |||||| || |||| ||||| || | || | |||| ||||||| Sbjct 139691 CTCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGCAATCCCTTCATGCTCTACAAG 139750 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 || | | |||| ||| ||||||||||||| |||| |||||| Sbjct 139751 GACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAA 139797 Score = 122 bits (134), Expect = 1e-22 Identities = 314/464 (68%), Gaps = 27/464 (6%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| |||||||| || ||| | || || ||||| || || ||||| ||||||| | Sbjct 140315 GGCCTCCGCAACTCGCTCCTCCTCGCACCCATGCCGACTGCCTCGACCTCTCAGATTCTT 140374 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||||| |||||||| ||||| | |||| | ||| ||||| ||| || Sbjct 140375 GGCTTCAACGAGTGCTTCGAGCCTTACACCAGCAACCTTTACACCCGCCGAGTCCTGGCC 140434 Query 55598 GGTGAGTTTGTCATGATCAACAA---GCACCT-CGTCAAGGACCTGCAG-AAGATCAACA 55652 || ||||| | ||||| || ||| ||| | | | || || ||| || Sbjct 140435 GGCGAGTTCCAAGTCGTCAACCCTTGGCTCCTGCGTGA-GCTCGTGGAGCAAGGTCT--- 140490 Query 55653 AGTGGAACCCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATC 55709 ||||||| |||||| |||| || || |||| | |||| || || | || || Sbjct 140491 -GTGGAACGAGCAGATGAAGAACCGTATCATTGCCC---ACGGTGGCTCGATTCAAAACG 140546 Query 55710 TG---GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 || | |||||| || |||||| | ||| |||||| |||||||| | || | Sbjct 140547 TGCCCGGCATTCCTGACCGCATCAAGGCTCTCTACAAGACGGTCTGGGAGATCTCGCAAA 140606 Query 55767 AGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825 || ||| | || |||||| || || || || |||| |||| ||| || || |||| Sbjct 140607 AG-GTCATCATAGACATGGCCGCCGACCGAGGAGCGTTCATCTGCCAATCGCAAAGTCTG 140665 Query 55826 AACATCTTCATGGAGA-ATCCTTCACTGGCCAAGTT--GAGCTCGATGCACTTTTACGGG 55882 |||||| | || || | || | ||| ||| | |||| |||||||| ||||| Sbjct 140666 AACATCCACCTGCAGGCACCCAGCTTTGGTCAACTGACGAGC---ATGCACTTCTACGGC 140722 Query 55883 TGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||||||||||| || |||||||| | ||||| || || ||||| Sbjct 140723 TGGAAGAAGGGTCTGAAGACGGGAACATACTACCTCCGAACCCG 140766 >seq35 Length=115666 Score = 120 bits (132), Expect = 3e-22 Identities = 353/531 (66%), Gaps = 45/531 (8%) Strand=Plus/Minus Query 74484 AAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAAGGGTTCTTTGCA 74543 || ||||| |||||||||| || || ||||||||||| ||||||| |||||| | ||| Sbjct 64982 AAGAAGTTCGTCTTCCCTTGCAGAGAAATGTTCTCCATAAAGTCGAAGGGGTTCGTCGCA 64923 Query 74544 CCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGGCGATCCGCCACAAATTGAATG 74600 ||| ||||||| |||| | ||| || || || || ||||| | ||| Sbjct 64922 TTGTAGT---GCTTCTCGTTACCAAGCGAAACCAGTAGACGGTCGGCAACAAACTCGATG 64866 Query 74601 TACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGTGCCTCGGTGATA 74660 ||||| ||||| | || | ||||||||| ||| ||||| || ||||| | Sbjct 64865 TACTGAGTCATCAGCCGGGCGTTCATGCCGATCAGTGATACTGGCAGAGCATCGGTCAGG 64806 Query 74661 AAC------TCACT---CTCCACCTCGCAAGCCCATT----GGACAATCTTGTGAATGTC 74707 || ||| | | || |||||| | ||| | ||| ||| | || ||| Sbjct 64805 AAAGCTTGTTCAATGGTCACCGCCTCGCTAATG-ATTCTCAGCACAGTCTCGGGA-TGT- 64749 Query 74708 TTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATGCG 74766 |||| ||| | | ||||| | | ||| | || |||||| || ||| Sbjct 64748 -------GGGCGCTTCT---TGAGGTGGCCGAACAGCAGGCA-GGCAAAGTCGGTGTGCA 64700 Query 74767 AGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCT 74826 |||||| |||| ||| |||| |||||||| || | ||||| ||||| || || |||| Sbjct 64699 GGCCTTCGTCTCGGCTAATCAGCTCATTCGAGAAGGTCAGGCCGGGCATCAGACCGCGCT 64640 Query 74827 TCTTCAACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCA 74885 |||||| ||||||||||| | || || || ||| |||||||||||| ||||| ||| Sbjct 64639 TCTTCAGCCAAAAGATGGACGCA-AACGAGCCAGAGAAGAAGATGCCCTCGACGGCAGCA 64581 Query 74886 AAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTG--AGCC 74939 ||||| | ||||| | || || || | || ||| ||||| || | |||| Sbjct 64580 AAGGCAATCAGGCGCTCAGC-AAATGTCGACTGGGTGTCGCTGATCCA--TCGGATAGCC 64524 Query 74940 CATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990 || || |||||| | ||||| | || | || ||||| || | ||| ||| Sbjct 64523 CACTCGGCTTTTTGCTTGACGACGGGAATGGTCTCGATGGCGTCGAACAGG 64473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210753566600