Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq25 105 4e-18 seq142 102 5e-17 seq4 98.7 6e-16 seq119 86.0 4e-12 >seq25 Length=137175 Score = 105 bits (116), Expect = 4e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||| ||||| || || ||||| |||| || || || Sbjct 84048 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCGAGCTGC 84107 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||| ||||||||||| || | |||||||||||| |||| || Sbjct 84108 TTGCCGGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATC-TT 84166 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| | |||||| || | ||| ||||| || ||||| Sbjct 84167 GGTCTTGACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTCCCGGT 84226 >seq142 Length=44629 Score = 102 bits (112), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| ||||| || || || || || || || |||||||||| || Sbjct 44293 ATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCGTCTTCAAGCTG 44352 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | |||||||||||||| || | ||||||||||| |||| | Sbjct 44353 CTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATC-T 44411 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | || || ||| | || ||||| | ||| ||||| | ||| || || || |||| Sbjct 44412 TGGTCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGG 44471 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || || || || |||||||| Sbjct 44472 TCAGGGTCTTGACGAAGATCTGCAT 44496 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| || ||||| || || || || ||||| ||||||| || || Sbjct 44522 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCGTCCGTCTTCCAGCTGC 44581 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 || ||||| || || | |||||||||||||| || | ||||||||| Sbjct 44582 TTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTG 44629 >seq4 Length=308026 Score = 98.7 bits (108), Expect = 6e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||| || || ||||| || || | || || || || Sbjct 60537 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCCTCGAGCTGC 60478 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||||||||||| || | ||||||||||| |||| || Sbjct 60477 TTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATC-TT 60419 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || || | || ||||| | |||||| || | ||| || || ||||| || Sbjct 60418 GGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTACCCGT 60359 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || |||||||||||| || Sbjct 60358 GAGGGTCTTGACGAAAATCTGCATGCTG 60331 >seq119 Length=54761 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||| || || ||||| || || |||||||||| || Sbjct 54754 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCAAGCTGC 54695 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || ||||| || || | || ||||||||||| || | ||||||||||| Sbjct 54694 TTGCCGGCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTC 54645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726657966711