Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 194 4e-44 seq25 176 1e-38 seq119 174 4e-38 seq142 172 1e-37 seq32 170 4e-37 seq23 91.5 3e-13 >seq4 Length=308026 Score = 194 bits (214), Expect = 4e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || |||| ||| || | ||||| Sbjct 60546 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCC 60487 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| |||||||| ||||||| || ||||||||| Sbjct 60486 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCC 60427 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||| || |||||||| ||||| ||| Sbjct 60426 TGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTC 60367 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 60366 TTACCCGTGAGGGTCTTGACGAAAATCTGCAT 60335 >seq25 Length=137175 Score = 176 bits (194), Expect = 1e-38 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| ||||| | || || | || || Sbjct 84039 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCC 84098 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || ||||||||||| ||||||| || |||||||| Sbjct 84099 TCGAGCTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCT 84158 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| ||| || |||||||| ||||||||| Sbjct 84159 TGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTC 84218 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 84219 TTCCCGGTGAGGGTCTTGAC 84238 >seq119 Length=54761 Score = 174 bits (192), Expect = 4e-38 Identities = 158/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||||||||| || |||||||| || |||||||| || || | ||| || | || ||||| Sbjct 54761 GACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTC 54702 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||||| ||||| || |||||||||||||| ||||||| || ||||||||||| Sbjct 54701 AAGCTGCTTGCCGGCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTG 54642 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || || || || |||||||| ||| ||||||||||||||||| ||||| Sbjct 54641 AATCTTGGTCTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTT 54582 Query 211085 TCCCGTGAGAGTCTTTACA 211103 || || | ||||| ||| Sbjct 54581 GCCGGTCAAGGTCTTAACA 54563 >seq142 Length=44629 Score = 172 bits (190), Expect = 1e-37 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||||||||| || ||||| || ||||| ||||| || || || || || || | || Sbjct 44272 TCCACGAAGTCTGAGAACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAGAG 44331 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || ||||| |||||||| || |||||||| ||||| |||||||| ||||||| Sbjct 44332 AGTGCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAAT 44391 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| ||||| ||||| ||| || || || Sbjct 44392 GCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTC 44451 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || || || ||||| || || | |||||| Sbjct 44452 GAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 44496 Score = 122 bits (134), Expect = 2e-22 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || |||||||| ||||||||||| || |||||||| || || | || || Sbjct 44503 ACGGAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGT 44562 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| |||||||||||||| || |||||||| ||||| |||||||| ||||||| || Sbjct 44563 TCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCC 44622 Query 211013 TTCCTTG 211019 |||||| Sbjct 44623 CTCCTTG 44629 >seq32 Length=118755 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || || || | || || Sbjct 111261 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCC 111320 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| |||||||| || |||| || |||||||| Sbjct 111321 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCT 111380 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || ||| |||||||| || || ||| Sbjct 111381 TGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTC 111440 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||||||||| || | ||||| Sbjct 111441 TTGCCGGTGAGAGTCTTTACGAAGATTTGCAT 111472 >seq23 Length=147171 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 ||| || ||||| ||||||||||| | |||||| ||||||| ||| || || || || Sbjct 139666 GGCCTTGCCTTCCTTCTCGTACTTCTCGTAGAGGGCCTCGAACTCCTCGCCGTACACGTC 139607 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 |||||||||| ||| |||||||| | ||| ||||| |||| | | |||| Sbjct 139606 GGCGAGACCGGGGCACTCGTTGGGGCACATCAGAGACCACTCGCCGTTCTGTTCGACTCT 139547 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTC 178379 |||||||| | ||| | |||||| || ||||| | ||||| |||| Sbjct 139546 CTTCATGAACAAGTCGGGAATCCAGAGAGCGTAGAAGAGCTCTCGAGCTC 139497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159140608795955