Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq119 104 2e-17 seq4 102 6e-17 seq25 91.5 1e-13 >seq119 Length=54761 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 23623 GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA- 23681 ||||| ||| | || || || || ||||||||||| ||||| ||| | ||||| |||| Sbjct 54564 GTTAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTCCGACACCATTGAC 54623 Query 23682 AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAAT 23741 ||| | || || || ||| ||||| || || | || || || ||||| || | || Sbjct 54624 AATGTCAAGAC-CAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGCCTGAT 54682 Query 23742 ATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGA 23801 || |||||||| || || ||||||| |||||| | ||| |||||||| || || || Sbjct 54683 TTTCGCCGGCAAGCAGCTTGAAGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGA 54742 Query 23802 GTCCAC 23807 |||||| Sbjct 54743 GTCCAC 54748 >seq4 Length=308026 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| || || ||||| ||||| || || ||| | Sbjct 60335 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCC 60394 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || || ||||| || || | || || || || Sbjct 60395 GACACCATCGACAATGTCAAGAC-CAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 60453 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | || ||| | || ||||| Sbjct 60454 ACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTTTCGGACTACAA 60513 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 60514 CATCCAGAAGGAGTCCAC 60531 >seq25 Length=137175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 23622 CGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA 23681 ||| || |||||||| || || |||||||| ||||| || || ||| | ||||| |||| Sbjct 84239 CGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCCTCCGACACCATTGA 84180 Query 23682 -AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAA 23740 || | || || || | | ||||| || || | || || || ||||| ||| | | Sbjct 84179 CAACGTCAAGACCAAGA-TCCAAGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGA 84121 Query 23741 TATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAG 23800 | || |||||||| || || || |||| || || | |||||||||||| || || | Sbjct 84120 TCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACGCTCTCCGATTACAACATCCAGAAGG 84061 Query 23801 AGTCCAC 23807 ||||||| Sbjct 84060 AGTCCAC 84054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006440349636