Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq32 167 6e-36 seq25 150 4e-31 seq119 145 2e-29 seq4 143 6e-29 seq142 113 1e-19 seq171 109 1e-18 seq23 107 5e-18 >seq32 Length=118755 Score = 167 bits (184), Expect = 6e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||||||||| || || |||| ||||| ||| || ||| | || || Sbjct 111261 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCC 111320 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || |||||||| || |||||||| ||||||||| Sbjct 111321 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCT 111380 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||| || || | || || ||| Sbjct 111381 TGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTC 111440 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| |||| ||| | |||||| Sbjct 111441 TTGCCGGTGAGAGTCTTTACGAAGATTTGCAT 111472 >seq25 Length=137175 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| |||||||||| | |||| || || Sbjct 84039 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCC 84098 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || ||||||||||| || ||||| || ||||||||| Sbjct 84099 TCGAGCTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCT 84158 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || |||||||| |||| ||||| || | ||||||||| Sbjct 84159 TGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTC 84218 Query 225682 TTGCCCGT 225689 || || || Sbjct 84219 TTCCCGGT 84226 >seq119 Length=54761 Score = 145 bits (160), Expect = 2e-29 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 |||||||||||| ||||| || || |||| ||||| |||| | ||| | || ||||| Sbjct 54761 GACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTC 54702 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 |||||||| || ||||| || || ||||||||||| || ||||| || |||||||| || Sbjct 54701 AAGCTGCTTGCCGGCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTG 54642 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 ||||| ||| ||| || |||||||| |||| || || || | ||||| ||||| Sbjct 54641 AATCTTGGTCTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTT 54582 Query 225684 GCCCGTCAAAGTTTT 225698 ||| ||||| || || Sbjct 54581 GCCGGTCAAGGTCTT 54567 >seq4 Length=308026 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| ||||| || | | ||| | ||||| Sbjct 60546 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCC 60487 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || |||||||| || ||||| || |||||||| Sbjct 60486 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCC 60427 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| |||| ||||| || | ||||| ||| Sbjct 60426 TGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTC 60367 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | ||||| Sbjct 60366 TTACCCGTGAGGGTCTTGACGAAAATCTGCAT 60335 >seq142 Length=44629 Score = 113 bits (124), Expect = 1e-19 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || ||||||||||||||||| || || |||| ||||| || | || ||| Sbjct 44503 ACGGAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGT 44562 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || ||||| |||||||| || |||||||| || || |||||||| || ||||| || Sbjct 44563 TCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCC 44622 Query 225612 TTCCTTG 225618 |||||| Sbjct 44623 CTCCTTG 44629 >seq171 Length=36068 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||||||||||| ||||||||||| || ||||| | | ||||| |||||| | |||||| Sbjct 27490 CAACTTTACAATGTTATTATTACAGCACATGCTCTAATAATGATATTCTTTATGGTTATG 27431 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || ||| | || || || || || | || |||| ||||| | || |||||| Sbjct 27430 CCTAGAATGGTTGGAGGATTTGGTAACTACCTCCTTCCCGTAATGGTAGGAAGACCTGAT 27371 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 |||||||||||| | || |||||||| ||||| |||| || ||||| || ||||| Sbjct 27370 ATGGCTTTTCCACGACTAAACAATATCTCATTTTGGCTACTGCCTCCTTCACTAATTCTA 27311 >seq23 Length=147171 Score = 107 bits (118), Expect = 5e-18 Identities = 187/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| ||| || | ||||| ||||||| |||||||| |||| ||| Sbjct 139779 TTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCG 139720 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || |||| ||| | ||| || | |||||| || | || | |||||| Sbjct 139719 GTCTGGGCCTCGAGGATGGCGTACCAGAGCTTTTGAGCCTTGATGGTGCGACGGGCCTTG 139660 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 |||||| |||||||||| ||||| || |||| || || | ||||| | ||| ||||| Sbjct 139659 CCTTCCTTCTCGTACTTCTCGTAGAGGGCCTCGAACTCCTCGCCGTACACGTCGGCGAGA 139600 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 ||||| || || ||||| | ||| ||| || || | ||| || ||||||||| Sbjct 139599 CCGGGGCACTCGTTGGGGCACATCAGAGACCACTCGCCGTTCTGTTCGACTCTCTTCATG 139540 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 || | ||| | |||| | |||||||| || Sbjct 139539 AACAAGTCGGGAATCCAGAGAGCGTAGAAGAG 139508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192519480772298