Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq32 129 1e-24 seq142 122 2e-22 seq4 107 4e-18 seq25 95.1 3e-14 seq119 91.5 3e-13 >seq32 Length=118755 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || ||||| ||||| || ||||||||||| ||| | ||| | Sbjct 111254 GAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCG 111313 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | ||| ||||||| | || || || Sbjct 111314 ACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTC 111373 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || |||||| | || | | |||| ||| || || || || || Sbjct 111374 CTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGT 111433 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| ||||||||||| ||||||| ||||| Sbjct 111434 AATAGTCTTGCCGGTGAGAGTCTTTACGAAGATTTGCAT 111472 >seq142 Length=44629 Score = 122 bits (134), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||||||| |||||||| ||||| ||||| || || || ||||| |||| | ||| | Sbjct 44279 AGTCTGAGAACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGG 44338 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || ||||| || ||||| ||||||||||| || | ||| ||||||| | || || | Sbjct 44339 CCGTCTTCAAGCTGCTTT--CCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCT 44396 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || || ||||| | || | |||| || ||| ||||| || | Sbjct 44397 CCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGGG 44456 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| || || ||||| ||||||| |||||| Sbjct 44457 TGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 44496 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/125 (76%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| ||||| || ||||| ||||| || ||||||||||| || | | ||||| Sbjct 44506 GAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCG 44565 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || ||||| ||||||||||| || | ||| ||||||| | || || Sbjct 44566 TCCGTCTTCCAGCTGCTTT--CCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCC 44623 Query 152004 TCCTT 152008 ||||| Sbjct 44624 TCCTT 44628 >seq4 Length=308026 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | | ||| | ||||| Sbjct 60546 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCC 60487 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||| ||||||| | || || ||||| || Sbjct 60486 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCC 60427 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| || ||| || || || || ||||| Sbjct 60426 TGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTC 60367 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| ||||| | |||||| Sbjct 60366 TTACCCGTGAGGGTCTTGACGAAAATCTGCAT 60335 >seq25 Length=137175 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || |||||||||||||||| | |||| || || Sbjct 84038 GAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTC 84097 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | || ||||||| | || || ||||| || Sbjct 84098 CTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTC 84157 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || ||||| | || | | |||| || ||| || || || || || || Sbjct 84158 TTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGT 84217 Query 152072 TTTGCCCGTGAGAGTCTTCACG 152093 || || ||||| ||||| ||| Sbjct 84218 CTTCCCGGTGAGGGTCTTGACG 84239 >seq119 Length=54761 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 |||||| || || || ||||| || ||||||||||| |||| | ||| | || ||||| Sbjct 54761 GACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTC 54702 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || |||||||| || || | || ||||||| | || || ||||| || || Sbjct 54701 AAGCTGCTTGCCGGCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTG 54642 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || |||||| | || | | |||| || ||| || || ||||| || || || Sbjct 54641 AATCTTGGTCTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTT 54582 Query 152075 GCCCGTGAGAGTCTTCAC 152092 ||| || | ||||| || Sbjct 54581 GCCGGTCAAGGTCTTAAC 54564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153809461186657