Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq32 136 3e-27 seq4 132 3e-26 seq25 127 1e-24 seq119 102 6e-17 >seq32 Length=118755 Score = 136 bits (150), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||||||||| ||| || ||| |||| || Sbjct 111264 ACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCG 111323 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||| ||||| || || | || | ||| ||||| || Sbjct 111324 AGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGG 111383 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| ||||| ||||| | ||||| |||| Sbjct 111384 ATCTTGGTCTTGACATTGT--CGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCT 111441 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 | || ||||| ||||| ||||||||||||||| ||| Sbjct 111442 TGCCGGTGAGAGTCTTTACGAAGATTTGCATGGTGT 111477 >seq4 Length=308026 Score = 132 bits (146), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| |||||| ||||||||||| || | || || | || || Sbjct 60544 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCCTC 60485 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||| || || | ||| | || ||||| ||| Sbjct 60484 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTG 60425 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||||| ||| |||||||| | || || ||| Sbjct 60424 GATCTTGGTCTTGACATTGT--CGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTC 60367 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || |||||||||||||| ||||| || |||||| || Sbjct 60366 TTACCCGTGAGGGTCTTGACGAAAATCTGCATGCTG 60331 >seq25 Length=137175 Score = 127 bits (140), Expect = 1e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| |||||||||||||||| ||| || |||| || Sbjct 84042 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCG 84101 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||| ||| || || || | ||| | || ||||| || Sbjct 84102 AGCTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCTTGG 84161 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| ||| |||||||| | || |||||||| Sbjct 84162 ATCTTGGTCTTGACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTC 84221 Query 44309 CCCGTGAGGGTCTTCACG 44326 || ||||||||||| ||| Sbjct 84222 CCGGTGAGGGTCTTGACG 84239 >seq119 Length=54761 Score = 102 bits (112), Expect = 6e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||||||||| |||| || ||| |||| || Sbjct 54760 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCA 54701 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || |||| || || || || | ||| | || ||||| ||| Sbjct 54700 AGCTGCTTGCCGGCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 54641 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| ||| || ||||| | || || |||| Sbjct 54640 ATCTTGGTCTTGACATTGT--CAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCT 54583 Query 44307 TTCCCGTGAGGGTCTTCAC 44325 | || || | |||||| || Sbjct 54582 TGCCGGTCAAGGTCTTAAC 54564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987034877239