Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 165 2e-35 seq142 158 3e-33 seq25 154 4e-32 seq32 141 2e-28 seq119 140 8e-28 >seq4 Length=308026 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||||||||||||||| ||| ||| Sbjct 60338 CAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCCGAC 60397 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || ||||||||||| || Sbjct 60398 ACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAG 60457 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | |||||| | || || ||| || Sbjct 60458 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTTTCGGACTACAACATC 60517 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 60518 CAGAAGGAGTCCACCCTCCACCTCGT 60543 >seq142 Length=44629 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||||||||| || || ||| ||| Sbjct 44493 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCGGAC 44434 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || || ||||||||||| || Sbjct 44433 ACTATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAG 44374 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| ||||| || | ||||| |||| || || | Sbjct 44373 CGCCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGCACTCTCTCCGACTACAATATT 44314 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || |||||||||||| | ||||| Sbjct 44313 CAGAAGGAGTCGACTCTGCATCTTGTTCTCAGACT 44279 Score = 93.3 bits (102), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || || ||||||||||| || || || |||||||||||||| ||||| ||||| Sbjct 44629 CAAGGAGGGCATTCCTCCGGACCAACAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAAGA 44570 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||| | ||||| | || || ||| |||| || || || || || || |||||| | | Sbjct 44569 CGGACGAACTCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTCCACCTTGTTCTCCG 44510 Query 178136 ACTC 178139 |||| Sbjct 44509 ACTC 44506 >seq25 Length=137175 Score = 154 bits (170), Expect = 4e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 177932 CGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGA 177991 ||| || || ||||| || || |||||||||||||||||||| ||| |||||||| || Sbjct 84239 CGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCCTCCGACACCATTGA 84180 Query 177992 GAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTAT 178051 |||||||| ||||| || ||||| || || || ||||||||||| ||||| || || Sbjct 84179 CAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGAT 84120 Query 178052 CTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 ||||||||| || |||||||| || || | || || ||||||| ||| |||| || || Sbjct 84119 CTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACGCTCTCCGATTACAACATCCAGAAGGA 84060 Query 178112 ATCAACACTGCATCTTGT 178129 || || || || || || Sbjct 84059 GTCCACCCTCCACCTCGT 84042 >seq32 Length=118755 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| || || || || ||||||||||| ||| || ||| Sbjct 111469 CAAATCTTCGTAAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTCGAATCTTCCGAC 111410 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| || || || || |||||||| || Sbjct 111409 ACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCGGACCAACAG 111350 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | ||||| ||| || ||| || Sbjct 111349 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACAACATC 111290 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 111289 CAGAAGGAGTCCACTCTCCACCTCGT 111264 >seq119 Length=54761 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| |||||||| || ||| |||||||| || || ||||| Sbjct 54576 ACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTCCGACACCATTGACAATGTCAAGACC 54635 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || || ||||||||||| ||||| || || |||||||| || Sbjct 54636 AAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGCCTGATTTTCGCCGGCAAG 54695 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || | |||||| |||| || ||| |||| || || || || || || Sbjct 54696 CAGCTTGAAGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 54755 Query 178125 CTTGT 178129 ||||| Sbjct 54756 CTTGT 54760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203719370707798