Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 167 2e-36 seq142 150 2e-31 seq32 143 2e-29 seq25 131 2e-25 seq119 125 7e-24 >seq4 Length=308026 Score = 167 bits (184), Expect = 2e-36 Identities = 176/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || ||| ||||||||| ||||| ||||| || Sbjct 60561 CCACCACGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 60502 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 60501 AGAGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGA 60442 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | |||||| ||||||| Sbjct 60441 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCG--ATGGTGTCGGAGGACTCCA 60384 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || |||||||| || ||||| ||||||||||||||| Sbjct 60383 CCTCGAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 60334 >seq142 Length=44629 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || |||||||| || |||||||||||| || ||||||||||| ||||| |||| || Sbjct 44288 ACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCGTCTTCA 44347 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| |||||||| || |||||||||||||||| |||| || |||||||||| | Sbjct 44348 AGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 44407 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| ||| | | | |||||| ||||| || || | || || || || Sbjct 44408 ATCTTGGTCTT-GACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGGGTGATGGTCTT 44466 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| |||||||| Sbjct 44467 GCCGGTCAGGGTCTTGACGAAGATCTGCAT 44496 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| ||||| ||||| || Sbjct 44498 CCACCACGGAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 44557 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||| |||||||| || |||||||||||||||| ||| Sbjct 44558 AGAGTTCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGA 44617 Query 41756 ACGCTCTCCTTG 41767 | || ||||||| Sbjct 44618 ATGCCCTCCTTG 44629 >seq32 Length=118755 Score = 143 bits (158), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | || || || || ||| ||||||||| ||||| |||||| Sbjct 111244 CGCCACCACGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGC 111303 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 || ||||| |||| |||||||||||||||||||| ||||||||||||||||||| || Sbjct 111304 TCAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGG 111363 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811 ||| | ||||||||| ||| || ||| || | || | |||||| || || Sbjct 111364 GAATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCG--ATGGTGTCGGAAGATTC 111421 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || || ||||||||||| || |||||| Sbjct 111422 GACCTCGAGGGTAATAGTCTTGCCGGTGAGAGTCTTTACGAAGATTTGCATG 111473 >seq25 Length=137175 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||||||||| ||||| || |||||||| || || |||| ||| Sbjct 84042 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCG 84101 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||||||||| ||||| || |||||||||| |||| || ||||||||| | Sbjct 84102 AGCTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCTTGG 84161 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| ||| | | | |||||| ||||||||||| | || ||||| || Sbjct 84162 ATCTTGGTCTT-GACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTT 84220 Query 41833 ACCCGTCAGCGTCTTTACG 41851 || || || ||||| ||| Sbjct 84221 CCCGGTGAGGGTCTTGACG 84239 >seq119 Length=54761 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||||||||| ||||| |||||||| || ||||| |||| || Sbjct 54760 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCA 54701 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||||||||| |||||||| |||||||||| |||| || |||||||||| || Sbjct 54700 AGCTGCTTGCCGGCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCC-TG 54642 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || | | || | | | |||||| ||||| ||||| | || || || || Sbjct 54641 AATCTTGGTCTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTT 54582 Query 41833 ACCCGTCAGCGTCTTTAC 41850 || |||| ||||| || Sbjct 54581 GCCGGTCAAGGTCTTAAC 54564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299567660400