Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001645015.1_202016-05-16] 1,666 sequences; 30,384,772 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1256 143 4e-29 seq47 122 1e-22 >seq1256 Length=115194 Score = 143 bits (158), Expect = 4e-29 Identities = 313/463 (68%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || ||||| || | ||| ||||| | || || |||||| | ||| Sbjct 75135 CAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACATTGAGCCCTGGCACTCTGAC 75076 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| | | || ||| ||| || |||| |||||| | || Sbjct 75075 GTCTTCGAGTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTCCGAGCCCGTGAG 75016 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC-AACG--ACGGTGGC 97052 | || || || || ||| | || || |||||||||||||| ||| ||| |||| | Sbjct 75015 CTCTTCTACGCCCTTTGGATCCCTGACTTGTTCATGAAGCGAGTCGAACAGAACGGAG-- 74958 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | ||| || |||||||||| || |||||||| | ||| || ||||| ||| Sbjct 74957 -AGTGGTCGCTGATGTGCCCCGCTGAGTGCCCCGGTCTCGCTGATGTCTACGGCGACGAG 74899 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGA-GACGAGTCGATGC 97171 || ||||| ||| | ||||||| ||||| || | | | || ||| | || Sbjct 74898 TTCGAGGCTCTCTACGAGAAGTACGAGCGTGAGGGTCG-TGCTCGCCGAACCGTCAAGGC 74840 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | | || ||| | ||| | | ||||||| |||||||| | || | ||| || Sbjct 74839 TCAAAAGCTTTGGTACGCCGTTCTCGAGGCTCAGACGGAGACTGGCAACCCTTTCATGCT 74780 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||| | | || ||||| |||||| || | |||||||||||| |||| Sbjct 74779 TTACAAGGACGCTGCTAACCGCAAGTCGAACCAAAAGAACCTCGGCACCATCAAGTGCTC 74720 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 || ||||||||||| || | |||||| | ||||||| ||| Sbjct 74719 TAACCTGTGCACGGAGATCATGGAGTACAGCGCTCCGGATGAG 74677 >seq47 Length=87938 Score = 122 bits (134), Expect = 1e-22 Identities = 220/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG--- 125315 |||||| | ||||| || | ||||| || || |||| ||||||||||| || Sbjct 15841 GAGAACATTCACTCCGAGACATACTCCCTCCTCATCGACACATACATTCGCGACCCCGCA 15782 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAAAGGC 125374 || || | || ||||| |||| || || || | || ||| | | |||| ||| Sbjct 15781 CAGCGCGAGTAC---CTCTTCGACGCGATGGAGACCATTCCCGTCGTCAAGCAAAA-GGC 15726 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | || |||||| | ||||| | || | | ||||| | ||||| || Sbjct 15725 CGAGTGGGCCCTGCGCTGGATCAACGACGAGGACTCCACCTTTGCCGAGCGCCTGGTTGC 15666 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || || ||||||||||| |||||||| || || ||| || ||||||| |||||||| Sbjct 15665 CTTTGCTGCCGTAGAGGGTATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAA 15606 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || ||||||||||| || || | |||||| | || ||||||||||| Sbjct 15605 GAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCAGCCGAGACGAGGG 15546 Query 125555 CCTACACTGTGACTTTGC 125572 || ||| |||||||| Sbjct 15545 TCTGCACACCGACTTTGC 15528 Score = 118 bits (130), Expect = 2e-21 Identities = 184/252 (73%), Gaps = 11/252 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| || || ||||||| ||| ||| |||| || Sbjct 16157 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACGGCCGAGGAGATCGACCTT 16098 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||| ||||| | |||| || | |||||| | || || Sbjct 16097 TCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAACGAGCGACACTTCATCAGC 16038 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | || ||||| |||| || ||||| ||||||||||| || || || || || Sbjct 16037 CACGTCCTCGCATTCTTCGCCGCGTCAGATGGCATCGTCAACGAGAACCTCGTCGA-GCG 15979 Query 125198 ATTC-TCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 ||| ||| |||| | ||| | |||||| ||| ||||| ||||| |||||||||| Sbjct 15978 GTTCAGCTC-AGAG--GTCCAGGCAGCAGAGG-CTCGATGCTTCTACGGCTTCCAAATCA 15923 Query 125254 TGAT-TGAGAAC 125264 |||| |||| || Sbjct 15922 TGATGTGAGTAC 15911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043767442160