Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001645015.1_202016-05-16] 1,666 sequences; 30,384,772 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1377 111 1e-19 seq136 98.7 8e-16 >seq1377 Length=3727 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || |||||||| ||| |||||||||||||||||| || | || || || |||| || Sbjct 2363 ACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCG-AAAGGGTGCGGCCGTCTTC 2421 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || || || ||||| ||| || | | ||||||||| Sbjct 2422 GAGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 2481 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| ||| ||||| | | ||||| || | || ||| ||||| ||| ||||| || Sbjct 2482 AATCTTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTT 2541 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || ||||||||||| Sbjct 2542 GCCGGTGAGGGTCTTGACGAAAATCTGCAT 2571 >seq136 Length=82364 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | || || ||||| || |||||| || ||||||||||||| Sbjct 4111 ACCACCGCGCAGACGAAGAACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAGA 4052 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || ||||||| |||||||| ||| || | || | |||||||| ||| | Sbjct 4051 AAGAGTG-CGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAG 3993 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| || ||| ||| | | | || || || || | || || Sbjct 3992 GAATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCG--ATAGTGTCTGATGATTC 3935 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||| ||||| || |||||||| || || || ||||||||||| Sbjct 3934 CACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3884 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | || || ||||| ||| |||||| ||||||||||| || | Sbjct 3883 ACCACCGCGCAGACGAAGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 3824 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| |||| || || ||||| ||| || |||| | ||||| || ||| || Sbjct 3823 GAGGGTTCGGCCGTCTTCGAGTTGCTTTCCGGCGAAAATAAGGCGCTGTTGGTCCGGAGG 3764 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| || ||| ||||| | | || ||||| || | || || Sbjct 3763 AATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCG--ATGGTGTCTGATGATTCA 3706 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| ||| ||||| || |||||||| || || || || |||||||| Sbjct 3705 ACTTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 3656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||||||| ||||||||| |||||||| |||| | || |||| || Sbjct 4320 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCGTCTTCG 4261 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || || || || || ||| || | | ||||||||| | Sbjct 4260 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 4201 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | ||||| || | |||||| || | || || || || Sbjct 4200 ATCTTGGTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCAAGGGTGATTGTCTTG 4141 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || || |||||||| Sbjct 4140 CCGGTGAGGGTCTTGACGAAGATCTGCAT 4112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421242646757666