Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001645015.1_202016-05-16] 1,666 sequences; 30,384,772 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq136 116 4e-21 seq1377 113 4e-20 seq47 109 5e-19 seq1001 82.4 7e-11 >seq136 Length=82364 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||||| | || ||||| ||||| || ||||| || Sbjct 4338 CCACCGCGGAGACGGAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAG 4279 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||||||||| || || || ||||| Sbjct 4278 AGAGTACGTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGA 4219 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||| | | |||| |||||| | | ||||||| Sbjct 4218 ATGCCCTCCTTGTCCTGAATCTTGGTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 4159 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| || || || || || |||||||| Sbjct 4158 TCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4112 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || || || |||||||| Sbjct 4110 CCACCGCGCAGACGAAGAACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAGAA 4051 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||| | |||||||| || ||||| Sbjct 4050 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 3991 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| ||| | ||||| ||| ||||| | || || Sbjct 3990 ATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGT-CGATAGTGTCTGATGATTCCAC 3932 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||| || || || || ||||||||||| Sbjct 3931 CTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 3884 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || ||||| ||||| ||| Sbjct 3882 CCACCGCGCAGACGAAGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 3823 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || || ||||| ||| | || | ||||| || || ||||| Sbjct 3822 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCGGCGAAAATAAGGCGCTGTTGGTCCGGAGGA 3763 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| ||||| |||| |||| |||||| | || || Sbjct 3762 ATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTG-TCGATGGTGTCTGATGATTCAAC 3704 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | || |||||||| || || || || || |||||||| Sbjct 3703 TTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 3656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||||||| Sbjct 3654 CCACCACGCAGACGGAGGACCAAGTGCAGTGTGGACTCCTTTTGGATGTTGTAATCGGAA 3595 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || || ||| |||| | ||||| || || ||||| Sbjct 3594 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGG 3535 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | || | |||||| | | ||| || Sbjct 3534 ATACCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGACTCAACC 3475 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||| | || ||||| |||||||| || || Sbjct 3474 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTAAC 3440 >seq1377 Length=3727 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || ||||| |||||||| ||||| || Sbjct 2345 CCACCACGGAGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGAA 2404 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||||||| ||||| || || || Sbjct 2405 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCGGGGGG 2464 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||||| | || | |||||| | || || Sbjct 2465 ATGCCCTCCTTGTCCTGAATCTTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACC 2524 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||| || || || || ||||||||||| Sbjct 2525 TCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 2571 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||||||| Sbjct 2573 CCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 2632 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||| || || ||| |||||||||| || || || ||||| Sbjct 2633 AGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGA 2692 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||||| || Sbjct 2693 ATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATTGTCGATCGTGTCGGAGCTCTCCACC 2752 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| || || || || || |||||||| Sbjct 2753 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2799 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||||||| Sbjct 3029 CCACCACGCAGGCGGAGGACCAAGTGCAGTGTGGACTCCTTCTGGATGTTGTAATCGGAA 3088 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || || ||| |||| | ||||| || || ||||| Sbjct 3089 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGG 3148 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| | | || ||||| | |||| ||||||| ||| || Sbjct 3149 ATGCCCTCCTTGTCC-TGAATCTTTGTCTTGACATTGTCGATAGTGTCCGAGGACTCAAC 3207 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||| | || ||||| |||||||| || || Sbjct 3208 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGAC 3243 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 2801 CCACCACGAAGGCGGAGAACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2860 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||| ||| |||| | ||||| || || ||||| Sbjct 2861 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGTTGGTCCGGAGGG 2920 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||||| | |||| ||||| | || ||| Sbjct 2921 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATCGTGTCTGATGATTCAACT 2980 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || |||||||| || || || || || ||||||||| Sbjct 2981 TCGAGTGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 3028 >seq47 Length=87938 Score = 109 bits (120), Expect = 5e-19 Identities = 314/480 (65%), Gaps = 15/480 (3%) Strand=Plus/Minus Query 47084 AAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTT 47143 |||||||||||||||| || | || | |||| || ||| | ||||| || | Sbjct 15731 AAAGGCCGAGTGGGCCCTGCGCTGGATCAACGACGAGGACTCCACCTTTGCCGAGCGCCT 15672 Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTA 47203 | | || || || ||| ||||| |||||||||| ||| || || | || || | Sbjct 15671 GGTTGCCTTTGCTGCCGTAGAGGGTATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTG 15612 Query 47204 CATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGA 47263 | || | || | |||||||| ||||| || ||||||||| ||| |||| Sbjct 15611 GCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCAGCCGAGA 15552 Query 47264 CGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAAC-ACTAGAGTCGATCAAAAGT 47322 ||| || ||||||||| ||||||| || | || || | || |||| | Sbjct 15551 CGAGGGTCTGCACACCGACTTTGCTTGCTTGCTCTTCAGCCACC--------TCAAGAAG 15500 Query 47323 TGGACGTGCCCAC----CGT-CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGA 47377 || || ||| ||| | ||| ||| ||||||| | ||| |||||||| || Sbjct 15499 CGGCCGCACCCCGATGTCGTTCTGCG-CATCATTGCCGAGTCTGTCACCATTGAGCAGGC 15441 Query 47378 GTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAA 47437 || | |||| ||||| ||| || || | || |||||||| | ||||| | Sbjct 15440 TTTCCTGACCGATGCTCTTCCCTGTTCATTGATCGGCATGAACGCACGACTTATGAGCCA 15381 Query 47438 GTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCA 47497 |||||||||||||||||| ||||| ||||| || || | | ||| ||| | Sbjct 15380 GTACATCGAATTTGTCGCTGACCGACTGCTGGTAGCCCTCGGGAACGAGAAGCACTACAA 15321 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACttttt 47557 | || ||||| ||||| || ||| | ||||| ||||| | |||||||| ||||| || Sbjct 15320 CGCCACAAATCCCTTCGACTTCATGGAGAACATCTCGCTGCAAGGCAAGACAAACTTCTT 15261 >seq1001 Length=137376 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| || ||||| ||| | ||| || || || ||||| || || Sbjct 40978 GTGGATTCTTTTTGGATGTTGTAGTCGGATAGCGTTCGGCCGTCTTCGAGCTGCTTGCCG 40919 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || || || || || || |||||||||||||| ||| || |||| Sbjct 40918 GCGAAGATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGTCTTG 40859 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | ||| || |||| ||| | || ||||| || || || Sbjct 40858 ACGTTG-TCAATCGTGTCGGAGGACTCTACCTCGAGGGTGATGGTCTTGCCAGTAAGGGT 40800 Query 127096 TTTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 40799 CTTGACGAAGATCTGCATG 40781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490897695840