Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689945.1_202016-07-20] 470 sequences; 37,216,861 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq47 120 4e-22 seq22 118 1e-21 >seq47 Length=84389 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || || ||| ||| ||||||||||||| || || | |||||||| || || Sbjct 59209 CAAGCAAGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAAGGT 59150 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 ||| |||||||| || |||||||| || ||||| || ||||| || || || || || || Sbjct 59149 GAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAA 59090 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 ||| || || ||||| || |||||||||| Sbjct 59089 GAAGATACCCTCTACGGCAGCAAAGGCAA 59061 >seq22 Length=350823 Score = 118 bits (130), Expect = 1e-21 Identities = 421/651 (65%), Gaps = 13/651 (2%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || |||||||| || | |||| | | || || || ||| | || ||||||| |||| Sbjct 66425 TCGAACTCGTCGCCGTAGACATCAGCGAGACCGGGGCACTCAGCGGGGCACATCAGCGAC 66484 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 |||||||||| | | ||||| ||||| || | ||||| |||||||| || || Sbjct 66485 CACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCAGGGATCCAAAGGGCGTAGAAG 66544 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 || || | || || ||||| || || ||||| | || ||||||||| | | Sbjct 66545 AGCTCACGGGCTCGGACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAG 66604 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT-CCTCC 54189 | ||||| ||||| || || | ||| |||| | | || || || |||||| || || Sbjct 66605 ACGTCAGAGTGCCAGGGCTCAATGTAGATGGCGAAGGCACCTGGACGCTTGTTTGCCACC 66664 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 |||||| | ||| | ||||||||| || | || | | ||| || | ||||| || || Sbjct 66665 CTGATCGACGTAGCGAGCGGTGTTGTTGAAGACGCGAAGCATAGGCACGATACCGTTAGA 66724 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGAC 54308 |||| || || |||| || || || | |||| || | | || | || | Sbjct 66725 GACACCGTTAGTTCCGGCAATGTATGAGCCGGTACCACGGAT-GCAGTGGATGTTGAGGC 66783 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || ||| | || ||| | ||||| || | || || |||||||| | Sbjct 66784 CGATGCCACCAGCCGTCTTGCTGATCATGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGT 66843 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTT 54427 | || || ||| ||||| | | || || || |||||||| | | | | || Sbjct 66844 CGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGATGACATTTGAGGGTTGGGT-GTA 66902 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 || || || || | ||| || || || || || || | || || || | || ||||| Sbjct 66903 CCAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGTACTTCTCCGACATGAGGTTGTAA 66962 Query 54488 GTCTCGATAGCTGAGTCTAT----ATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || ||||| || ||| || |||| | |||| || || || || ||||| | Sbjct 66963 GTGTCGATGGCCTCGTCGATGGAACTCCCGTGGATG----CCGACAGCAACTCGCATGAG 67018 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGA 54594 |||||| || || | || ||| |||| ||| || ||||| ||||| Sbjct 67019 CATGTGTTGGGGGCGCTCGGCGACCTTGCCGTTGATGCGCAGCAGATAGGA 67069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718111885600