Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689945.1_202016-07-20] 470 sequences; 37,216,861 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq16 120 3e-22 seq418 114 1e-20 >seq16 Length=163030 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 |||| || || | | ||| | |||||||| | ||| |||||||||||| ||||| | Sbjct 127883 ATTGGCCACCACGGAGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGT 127942 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | | || || || | || || |||||||| || ||||| || | |||||||||||| | Sbjct 127943 CCGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCCG 128002 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGAT 43130 || | || |||||||||| ||| | || || |||| | | | ||||| ||| Sbjct 128003 GGGGGATGCCCTCCTTGTCC-TGAATCTTCGTCTTGACATTGTCGATGGTGTCTGATGAT 128061 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| |||| |||||||| ||||| || || ||||| || || || ||||| Sbjct 128062 TCCACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 128114 Score = 118 bits (130), Expect = 1e-21 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||||||| |||||| || || ||||| || | || || || |||| || Sbjct 133674 ACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCGTCTTCA 133615 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || | ||| || ||||| | || | || |||||||||| || Sbjct 133614 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTGTCC-TG 133556 Query 43095 ATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 | | || || |||| ||| | | | |||||| || || || |||| ||||| || | Sbjct 133555 AATCTTGGTCTTGA-CGTTGTCGATAGTGTCGGAGGACTCAACTTCGAGTGTGATTGTCT 133497 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| ||||| Sbjct 133496 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 133466 Score = 109 bits (120), Expect = 6e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || |||||||||||| ||||| || | || || || |||| || Sbjct 128362 ACCAAGTGCAGAGTTGACTCCTTTTGAATGTTGTAGTCCGACAATGTTCGGCCGTCCTCC 128421 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || | ||||||||| || | || | || |||||||||| || Sbjct 128422 AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCC-TG 128480 Query 43095 ATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 | | || || |||| ||| | | | ||||| || || || |||| ||||| || | Sbjct 128481 AATCTTGGTCTTGA-CGTTGTCGATAGTGTCTGAGGACTCGACTTCGAGTGTGATTGTCT 128539 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| ||||| Sbjct 128540 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 128570 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || | || || | |||||| || ||||| Sbjct 128607 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 128666 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| || | || || | ||| Sbjct 128667 GATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC-TGGATCTTCGTCTTCACGT 128725 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| |||||||| || | |||||||| ||||| || || ||||| | Sbjct 128726 TGTCGATGGTGTCTGATGATTCCACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTCA 128785 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 128786 CGAAGATCTGCAT 128798 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||||||| |||||| || || ||||| || | || || || |||| || Sbjct 128818 ACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCCGACAATGTTCGGCCGTCCTCG 128877 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || ||||| ||||||||||| | || | || |||||| || | Sbjct 128878 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGG 128937 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || ||| |||| ||| | | | ||||| || || || |||| |||||||| || Sbjct 128938 ATCTTTGTCTTGA-CGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTT 128996 Query 43154 GCCCGTTAGCGTCTTTAC 43171 ||| || || ||||| || Sbjct 128997 GCCAGTCAGAGTCTTGAC 129014 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || | || || | |||||| || ||||| Sbjct 133885 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 133826 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| || | || || | ||| Sbjct 133825 GATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC-TGGATCTTCGTCTTCACGT 133767 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| |||||||| || | |||||||| ||||| || || ||||| | Sbjct 133766 TGTCGATGGTGTCTGATGATTCCACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 133707 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 133706 CGAAGATCTGCAT 133694 >seq418 Length=175290 Score = 114 bits (126), Expect = 1e-20 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 54891 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 54950 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA--GC 43109 ||||||||||||||||| | || | | ||||||||| |||||| |||| || Sbjct 54951 GATGAGTCGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATTTTGGTCTTGACGGC 55010 Query 43110 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 |||| | | |||| || ||||| |||| ||||| || || ||||| || ||||| Sbjct 55011 GTCG--ATGGAGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTCAGGGTCTTG 55068 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 55069 ACGAAGATCTGCAT 55082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814240571600