Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689945.1_202016-07-20] 470 sequences; 37,216,861 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq22 141 1e-28 seq119 123 4e-23 seq47 122 1e-22 >seq22 Length=350823 Score = 141 bits (156), Expect = 1e-28 Identities = 314/464 (68%), Gaps = 9/464 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAA-CGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGA 96934 ||||| ||||| || || ||||| || | ||| ||||| | || || |||||| | || Sbjct 66667 CAGGGTGGCAAACAAGCGTCCAGGTGCCTTCGCCATCTACATTGAGCCCTGGCACTCTGA 66608 Query 96935 CGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGA 96994 ||| || || || |||| | | || ||| ||| || |||| |||||| | || Sbjct 66607 CGTCTTCGAGTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTCCGAGCCCGTGA 66548 Query 96995 CTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC-AACG--ACGGTGG 97051 | || || || || ||| | || || |||||||||||||| ||| ||| |||| | Sbjct 66547 GCTCTTCTACGCCCTTTGGATCCCTGACTTGTTCATGAAGCGAGTCGAACAGAACGGAG- 66489 Query 97052 CTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGA 97111 | ||| || |||||||||| || |||||||| | ||| || ||||| || Sbjct 66488 --AGTGGTCGCTGATGTGCCCCGCTGAGTGCCCCGGTCTCGCTGATGTCTACGGCGACGA 66431 Query 97112 GTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGA-GACGAGTCGATG 97170 ||| ||||| ||| | ||||||| ||||| || | | | || ||| | | Sbjct 66430 GTTCGAGGCTCTCTACGAGAAGTACGAGCGTGAGGGTCG-TGCTCGCCGAACCGTCAAGG 66372 Query 97171 CACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | | | | || ||| | ||| | | ||||||| |||||||| | || | ||| | Sbjct 66371 CCCAAAAGCTTTGGTACGCCGTTCTCGAGGCTCAGACGGAGACTGGCAACCCTTTCATGC 66312 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 | |||||||| | | || ||||| |||||| || | |||||||||||| ||| Sbjct 66311 TTTACAAGGACGCTGCCAACCGCAAGTCGAACCAAAAGAACCTCGGCACCATCAAGTGCT 66252 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||| ||||||||||| || | |||||| | ||||||| ||| Sbjct 66251 CCAACCTGTGCACGGAGATCATGGAGTACAGCGCTCCGGATGAG 66208 >seq119 Length=58549 Score = 123 bits (136), Expect = 4e-23 Identities = 397/610 (65%), Gaps = 27/610 (4%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| | ||||| || ||||| | |||||||||||| || || || ||| Sbjct 54246 TTGCGGAAGAAGATCAGACCGGC-CGGGGACCACGGAGAGTCTTGTGGGTGGTGGTAGTC 54304 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA-AT 127220 || | ||| || ||||| |||||| | |||| | | | |||| | || ||| | || Sbjct 54305 ACGACGTCGCAGTACTCGAAGGGGTTCGCGTTGACCTGGGCAGCAA-CGAGACCGGAGAT 54363 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 ||| || || ||| ||| || | ||| | || | ||| ||||| || || | Sbjct 54364 GTGGGCCATGTCGCACATGAGGAGCGAGTTGCTCGCCTTGGCGATCTCGGAGAGACGCTT 54423 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGT--GCCGGCTATGATTAGCCTAGGTTTGAAT 127338 |||||| || ||||| || | | | | |||| ||||| ||| | || | | Sbjct 54424 GTAGTCCCAGTCACGAGGGTA--AGCGGATCCACCGGAGATGATGAGCTTGGGACGGTAG 54481 Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 |||| || ||||||| || || | ||||||| ||| || |||| || | |||||| Sbjct 54482 AGATCAGCGTTCTCGGCCAGCTTCTCGTAGTCGAGGAGACCTGTCTTGGGGTTGACCTTG 54541 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT-------GCGGAAT----- 127446 || || | | | ||| ||| |||| ||| | ||| | || | Sbjct 54542 TAAGGGAAGGCCTGGAAGTAGATGGATGATGCGCTGATGTTCTTCTTGGGGGTGTAGGCG 54601 Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| || ||||| || ||||||| || | ||| |||||||| | | || | Sbjct 54602 CCGTGGGTGAGGTGACCACCGTCGGAGAGCTTGAGACCCATGATGCGCTCAAAGGGCTGG 54661 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | |||||||||||||| | ||||| | ||| || || || || Sbjct 54662 AGGAAGGCGGTGAAGACGGCAAAGTTGGCGGTAGAGCCGGCGTAAGGCTGGACGTTGACA 54721 Query 127567 CCCCA----TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 ||||| || || || | ||||| || ||||| || ||||| | || | Sbjct 54722 CCCCAGATCTTAGG----GTCGAGGTTGAAAGCCTTGAGAGCGCGTTGCTGGGTGAGGAT 54777 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGA 127682 |||| ||||| |||||||||||| ||||| || |||||| |||||| || Sbjct 54778 CTCGAGCTTGTCGATGTGCTCGTTACCACCGTAGTAGCGTGCGCCGGGCAGACCCTCTGA 54837 Query 127683 GTACTTGTTG 127692 |||||||||| Sbjct 54838 GTACTTGTTG 54847 >seq47 Length=84389 Score = 122 bits (134), Expect = 1e-22 Identities = 220/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG--- 125315 |||||| | ||||| || | ||||| || || |||| ||||||||||| || Sbjct 58889 GAGAACATTCACTCCGAGACATACTCCCTCCTCATCGACACATACATTCGCGACCCCGCA 58948 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAAAGGC 125374 || || | || ||||| |||| || || || | || ||| | | |||| ||| Sbjct 58949 CAGCGCGAGTAC---CTCTTCGACGCGATGGAGACCATTCCCGTCGTCAAGCAAAA-GGC 59004 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | || |||||| | ||||| | || | | ||||| | ||||| || Sbjct 59005 CGAGTGGGCCCTGCGCTGGATCAACGACGAAGACTCCACCTTTGCCGAGCGCCTGGTTGC 59064 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || || ||||||||||| |||||||| || || ||| || ||||||| |||||||| Sbjct 59065 CTTTGCTGCCGTAGAGGGTATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAA 59124 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || ||||||||||| || || | |||||| | || ||||||||||| Sbjct 59125 GAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCAGCCGAGACGAGGG 59184 Query 125555 CCTACACTGTGACTTTGC 125572 || ||| |||||||| Sbjct 59185 TCTGCACACCGACTTTGC 59202 Score = 118 bits (130), Expect = 2e-21 Identities = 184/252 (73%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| || || ||||||| ||| ||| |||| || Sbjct 58573 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACGGCCGAGGAGATCGACCTT 58632 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||| ||||| | |||| || | |||||| | || || Sbjct 58633 TCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAACGAGCGACACTTCATCAGC 58692 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | || ||||| |||| || ||||| ||||||||||| || || || || || Sbjct 58693 CACGTCCTCGCATTCTTCGCCGCGTCAGATGGCATCGTCAACGAGAACCTCGTCGA-GCG 58751 Query 125198 ATTC-TCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 ||| ||| |||| | ||| | |||||| ||| ||||| ||||| |||||||||| Sbjct 58752 GTTCAGCTC-AGAG--GTCCAGGCAGCAGAGG-CTCGATGCTTCTACGGCTTCCAAATCA 58807 Query 125254 TGAT-TGAGAAC 125264 |||| |||| || Sbjct 58808 TGATGTGAGTAC 58819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054846277200