Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689945.1_202016-07-20] 470 sequences; 37,216,861 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq16 120 3e-22 seq418 114 1e-20 >seq16 Length=163030 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | ||| |||||||||||| ||||| || | || || || | || || Sbjct 127906 ACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCG 127965 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || ||||| || | |||||||||||| | || | || |||||||||| || Sbjct 127966 AGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC-TG 128024 Query 42120 ATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || || |||| | | | ||||| |||||||| |||| |||||||| || Sbjct 128025 AATCTTCGTCTTGACATTGTCGATGGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTT 128084 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || ||||| || || || ||||| Sbjct 128085 GCCGGTGAGGGTCTTGACGAAAATCTGCAT 128114 Score = 118 bits (130), Expect = 1e-21 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||||||| |||||| || || ||||| || | || || || |||| || Sbjct 133674 ACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCGTCTTCA 133615 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || ||||| || | ||| || ||||| | || | || |||||||||| || Sbjct 133614 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTGTCC-TG 133556 Query 42120 ATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 | | || || |||| ||| | | | |||||| || || || |||| ||||| || | Sbjct 133555 AATCTTGGTCTTGA-CGTTGTCGATAGTGTCGGAGGACTCAACTTCGAGTGTGATTGTCT 133497 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| || ||||| ||||| Sbjct 133496 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 133466 Score = 109 bits (120), Expect = 6e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| || |||||||||||| ||||| || | || || || |||| || Sbjct 128362 ACCAAGTGCAGAGTTGACTCCTTTTGAATGTTGTAGTCCGACAATGTTCGGCCGTCCTCC 128421 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || ||||| || | ||||||||| || | || | || |||||||||| || Sbjct 128422 AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCC-TG 128480 Query 42120 ATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 | | || || |||| ||| | | | ||||| || || || |||| ||||| || | Sbjct 128481 AATCTTGGTCTTGA-CGTTGTCGATAGTGTCTGAGGACTCGACTTCGAGTGTGATTGTCT 128539 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| || ||||| ||||| Sbjct 128540 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 128570 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||||| ||||| || | || || | |||||| || ||||| Sbjct 128607 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 128666 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||||||| || | || || | ||| Sbjct 128667 GATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC-TGGATCTTCGTCTTCACGT 128725 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| |||||||| || | |||||||| ||||| || || ||||| | Sbjct 128726 TGTCGATGGTGTCTGATGATTCCACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTCA 128785 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 128786 CGAAGATCTGCAT 128798 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| ||||||||| |||||| || || ||||| || | || || || |||| || Sbjct 128818 ACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCCGACAATGTTCGGCCGTCCTCG 128877 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || ||||| ||||||||||| | || | || |||||| || | Sbjct 128878 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGG 128937 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || ||| |||| ||| | | | ||||| || || || |||| |||||||| || Sbjct 128938 ATCTTTGTCTTGA-CGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTT 128996 Query 42179 GCCCGTTAGCGTCTTTAC 42196 ||| || || ||||| || Sbjct 128997 GCCAGTCAGAGTCTTGAC 129014 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||||| ||||| || | || || | |||||| || ||||| Sbjct 133885 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 133826 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||||||| || | || || | ||| Sbjct 133825 GATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC-TGGATCTTCGTCTTCACGT 133767 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| |||||||| || | |||||||| ||||| || || ||||| | Sbjct 133766 TGTCGATGGTGTCTGATGATTCCACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 133707 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 133706 CGAAGATCTGCAT 133694 >seq418 Length=175290 Score = 114 bits (126), Expect = 1e-20 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 54891 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 54950 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA--GC 42134 ||||||||||||||||| | || | | ||||||||| |||||| |||| || Sbjct 54951 GATGAGTCGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATTTTGGTCTTGACGGC 55010 Query 42135 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 |||| | | |||| || ||||| |||| ||||| || || ||||| || ||||| Sbjct 55011 GTCG--ATGGAGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTCAGGGTCTTG 55068 Query 42195 ACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 55069 ACGAAGATCTGCAT 55082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209608624800