Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689945.1_202016-07-20] 470 sequences; 37,216,861 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq16 122 8e-23 >seq16 Length=163030 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || | || || || || ||||| ||||| || |||||| Sbjct 128113 ATACCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCG 128172 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | ||||||||||| |||||||| Sbjct 128173 GAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGA 128232 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || ||||| || || |||| || | || | ||||||||| ||| Sbjct 128233 GGAATGCCCTCCTTGTCTTGGATCTTCGTCTTGA-CGTTATCAATGGTGTCGGAGCTCTC 128291 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||||| | || |||||||| || || || || || || ||||| Sbjct 128292 GACTTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 128342 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || | ||| || || || || |||||||| || || || Sbjct 134148 CCACCGCGGAGACGGAGGACCAAATGAAGTGTGGACTCTTTTTGGATGTTGTAGTCAGAA 134089 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| ||||| || || || ||| | |||||||| || || ||||| ||| Sbjct 134088 AGGGTGCGGCCATCCTCCAACTGCTTGCCCGCGAAGATCAATCGCTGTTGATCCGGAGGA 134029 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || |||||||| || |||| || | || | ||||| || |||||||| Sbjct 134028 ATACCCTCCTTGTCTTGAATCTTGGTCTTGA-CGTTGTCGATAGTGTCTGAGGACTCGAC 133970 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || | || |||||||| || || || || || || ||||| Sbjct 133969 TTCGAGTGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 133922 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAATT 45195 ||||| ||||| |||||||| || || || || ||| | || | || |||| | Sbjct 128368 TGCAGAGTTGACTCCTTTTGAATGTTGTAGTCC--GACAATGTTCGGCCGTCCTCCAGCT 128425 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | || || ||| | |||||||| ||||| ||||| || ||||| || || || ||||| | Sbjct 128426 GCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGAATCT 128485 Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 | |||| || | || | ||||| || |||||||||||||| || | || |||||| Sbjct 128486 TGGTCTTGA-CGTTGTCGATAGTGTCTGAGGACTCGACTTCGAGTGTGATTGTCTTGCCG 128544 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || ||||| Sbjct 128545 GTGAGGGTCTTGACGAAGATCTGCAT 128570 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||||| || || ||||| ||||| || || || || ||| || || | || Sbjct 133669 ATGCAATGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCGTCTTCAAGCTG 133610 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || ||| | ||||||||||| |||||||| || ||||| || || || ||||| || Sbjct 133609 CTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTT 133550 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 |||| || | || | |||||||| ||||| |||||||| || | || ||||||| Sbjct 133549 GGTCTTGA-CGTTGTCGATAGTGTCGGAGGACTCAACTTCGAGTGTGATTGTCTTGCCGG 133491 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || || ||||| Sbjct 133490 TGAGGGTCTTGACGAAGATCTGCAT 133466 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || | ||| || || || |||||||| || || || || Sbjct 127888 CCACCACGGAGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGAA 127947 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || ||| | |||||||| ||||||||||| || Sbjct 127948 AGGGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCCGGGGGG 128007 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || ||||| || |||| || | |||||| || || || || Sbjct 128008 ATGCCCTCCTTGTCCTGAATCTTCGTCTTGACATTGTCGATGGTGTCTGATGATTCCACC 128067 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || |||||||| || || || || ||||| ||||| Sbjct 128068 TCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 128114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000544481200