Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689945.1_202016-07-20] 470 sequences; 37,216,861 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq16 143 2e-29 seq111 87.8 1e-12 >seq16 Length=163030 Score = 143 bits (158), Expect = 2e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 29552 ATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTAT 29611 ||| ||| || || | | ||| || ||||||||||| ||||| |||||||| ||||| | Sbjct 134156 ATCATTGGCCACCGCGGAGACGGAGGACCAAATGAAGTGTGGACTCTTTTTGGATGTTGT 134097 Query 29612 AATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGAT 29671 | || | || |||||| ||| || | || ||||| || | ||||||| || |||| Sbjct 134096 AGTCAGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCCGCGAAGATCAATCGCTGTTGAT 134037 Query 29672 CCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAA 29730 |||| ||||||||||| |||||||| ||| || || ||||| | || | |||||| || Sbjct 134036 CCGGAGGAATACCCTCCTTGTCTTG-AATCTTGGTCTTGACGTTGTCGATAGTGTCTGAG 133978 Query 29731 AGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || ||||| || | ||| || || || |||||||| Sbjct 133977 GACTCGACTTCGAGTGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 133922 Score = 141 bits (156), Expect = 7e-29 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 29553 TCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATA 29612 || ||| || || | | ||| || ||||||||||| ||||| || ||||||||||| || Sbjct 127881 TCATTGGCCACCACGGAGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTA 127940 Query 29613 ATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATC 29672 |||| || |||||| ||| ||||| || ||||| || | ||||||| ||||| || Sbjct 127941 GTCCGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 128000 Query 29673 CGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAA 29731 ||| || || ||||| ||||| || ||| || || |||||| | || | ||||| || Sbjct 128001 CGGGGGGATGCCCTCCTTGTCCTG-AATCTTCGTCTTGACATTGTCGATGGTGTCTGATG 128059 Query 29732 GTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || || || || ||||| || | ||| || || || |||||||| Sbjct 128060 ATTCCACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 128114 Score = 111 bits (122), Expect = 1e-19 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 || || ||||| || || || || || ||||||||||| || |||| |||| || || Sbjct 128356 CGGAGAACCAAGTGCAGAGTTGACTCCTTTTGAATGTTGTAGTCCGACAAT-GTTCGGCC 128414 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||| || | ||||||| ||||||||||| || || ||||| || Sbjct 128415 GTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGAGGGATGCCCTCCTT 128474 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || || ||||| | || | |||||| || || ||||| || || | Sbjct 128475 GTCCTG-AATCTTGGTCTTGACGTTGTCGATAGTGTCTGAGGACTCGACTTCGAGTGTGA 128533 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || | ||| || || || |||||||| Sbjct 128534 TTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 128570 >seq111 Length=618870 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || |||||||||||||| ||||| || || | | || || Sbjct 410831 ACGGAGGACGAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCGGATAGCGTTCGGCC 410772 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || ||||| || | || | | ||| || || || || || ||||| || Sbjct 410771 GTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTT 410712 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| || || || ||||| | || | ||||| || ||||| || || || | Sbjct 410711 GTCTTG-GATCTTGGTCTTGACGTTGTCAATCGTGTCGGAGGACTCTACCTCGAGGGTGA 410653 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | ||| || || || |||||||| Sbjct 410652 TGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 410616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216993416270