Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689945.1_202016-07-20] 470 sequences; 37,216,861 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq47 163 4e-34 seq441 104 3e-16 seq331 95.1 2e-13 >seq47 Length=84389 Score = 163 bits (180), Expect = 4e-34 Identities = 219/297 (74%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||| ||||| || || ||||| ||||| |||||||| ||| | ||||| | Sbjct 58889 GAGAACATTCACTCCGAGACATACTCCCTCCTCATCGACACATACATTCGCGACCCCGCA 58948 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAGGCCGA 1456133 || || ||||||| ||| || || || | || |||| | | | |||||||||| Sbjct 58949 CAGCGCGAGTACCTCTTCGACGCGATGGAGACCATTCCCGTCG-TCAAGCAAAAGGCCGA 59007 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 ||||| || ||||||||| | || | | || || |||||||||||| || || | | Sbjct 59008 GTGGGCCCTGCGCTGGATCAACGACGAAGAC-TCCAC-CTTTGCCGAGCGCCTGGTTGCC 59065 Query 1456194 TTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| || || ||||| ||||| ||||| ||| |||| | ||||||| ||||||||| Sbjct 59066 TTTGCTGCCGTAGAGGGTATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAG 59125 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||| || ||||||||||||| || ||| |||||| | ||||| || ||||| Sbjct 59126 AAGCGTGGTCTCATGCCCGGTC-TCACCTTCTCCAACGAGCTCATCAGCCGAGACGA 59181 Score = 122 bits (134), Expect = 1e-21 Identities = 171/237 (72%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| || || ||||| ||||||||| |||||| Sbjct 58572 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCATCGTTCTGGACGGCCGAGGAGATCGACC 58630 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| | ||| |||| ||||||| || ||||||| Sbjct 58631 TTTCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAACGAGCGACACTTCATCA 58690 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||| || || |||||| ||||||||||| ||||||||| | || Sbjct 58691 GCCACGTCCTCGCATTCTT-CGCCGCGTCAGATGGCATCGTCAACGAGAACCTCGTCGAG 58749 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | ||||||||| ||||||| || | || ||||| ||||| ||| Sbjct 58750 CGGTTCAGCTCAGAGGTCCAGGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAAATC 58806 >seq441 Length=137317 Score = 104 bits (114), Expect = 3e-16 Identities = 166/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||||||||||||| || | | ||| || |||||| | Sbjct 26757 ATCTACCGTGTCCTCAAGCAGGTGCACCCCGACACTGGT-----ATC-TCAAACAAGGCT 26704 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| ||||||| || ||| | ||||| |||| ||||||| || ||||||| Sbjct 26703 ATGGCCATCCTGAACTCCTTCGTCCAAGACATCTTCGAGCGCATCG-CATCGAGGCCTCC 26645 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG--CGCGAGATCCAGACCGCCG 725088 || || || ||||||| || ||| | | | ||||||||||| ||||| | Sbjct 26644 AAGCTTGCATCCTACAACAAG---AAGTCGACCATCTCTGCCGCGAGATCCAAACCGCTG 26588 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || ||| | | ||| ||||| ||| ||||||| |||| ||||| |||| Sbjct 26587 TCCGACTTATCCTCCCCGGTGAACTCTCCAAGCACGCCATCTCTGAGGGAACCA 26534 >seq331 Length=490310 Score = 95.1 bits (104), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||| || |||||| || | | ||| ||||||||| || Sbjct 316194 ATCTACCGTGTCCTCAAGCAAGTCCACCCCGACACTGGT-----ATC-TCCAACAAGGCC 316247 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | ||||| || || | ||||| |||| ||||||| |||| || Sbjct 316248 ATGGCCATCCTCAACTCCTTCGTACAAGACATCTTCGAGCGCATCGCATCCGAAGCTTCC 316307 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || | ||||||| | ||| ||| | | ||||||||||| || ||||| Sbjct 316308 AAACTCGCATCATACAACAAGAAGAGCACCATCTCCGCACGCGAGATCCAAACAGCCGTC 316367 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | ||| ||||| ||| ||||||| |||| ||||| |||| Sbjct 316368 CGACTCATCCTCCCCGGTGAACTCTCCAAGCACGCCATCTCGGAGGGGACCA 316419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177765867636140