Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689965.1_202016-07-20] 8,805 sequences; 43,736,635 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4834 120 4e-22 seq248 120 4e-22 >seq4834 Length=10274 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || || ||| ||| ||||||||||||| || || | |||||||| || || Sbjct 9302 CAAGCAAGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAAGGT 9243 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 ||| |||||||| || |||||||| || ||||| || ||||| || || || || || || Sbjct 9242 GAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAA 9183 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 ||| || || ||||| || |||||||||| Sbjct 9182 GAAGATACCCTCTACGGCAGCAAAGGCAA 9154 >seq248 Length=52618 Score = 120 bits (132), Expect = 4e-22 Identities = 420/650 (65%), Gaps = 12/650 (2%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || |||||||| || | |||| | | || || || ||| | || ||||||| |||| Sbjct 27864 TCGAACTCGTCGCCGTAGACATCAGCGAGACCGGGGCACTCAGCGGGGCACATCAGCGAC 27805 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 |||||||||| | | ||||| ||||| || | ||||| |||||||| || || Sbjct 27804 CACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCAGGGATCCAAAGGGCGTAGAAG 27745 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 || || | || || ||||| || || ||||| | || ||||||||| | | Sbjct 27744 AGCTCACGGGCTCGGACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAG 27685 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 | ||||| ||||| || || | ||| |||| | | || || || ||||| || ||| Sbjct 27684 ACGTCAGAGTGCCAGGGCTCAATGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCC 27625 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 ||||| | ||| | ||||||||| || | || | | ||| || | ||||| || || Sbjct 27624 TGATCGACGTAGCGAGCGGTGTTGTTGAAGACGCGAAGCATAGGCACGATACCGTTAGAG 27565 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACC 54309 |||| || || |||| || || || | |||| || | | || | || || Sbjct 27564 ACACCGTTAGTTCCGGCAATGTATGAGCCGGTACCACGGAT-GCAGTGGATGTTGAGGCC 27506 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 || || || ||| | || ||| | ||||| || | || || |||||||| || Sbjct 27505 GATGCCACCAGCCGTCTTGCTGATCATGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGTC 27446 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTTC 54428 || || ||| ||||| | | || || || |||||||| | | | | || | Sbjct 27445 GATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGATGACATTTGAGGGTTGGGT-GTAC 27387 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | || || || | ||| || || || || || || | || || || | || ||||| | Sbjct 27386 CAGCGTTGAAGAGGGTGGGGGAGGCATGGGTGAAGTACTTCTCCGACATGAGGTTGTAAG 27327 Query 54489 TCTCGATAGCTGAGTCTAT----ATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 | ||||| || ||| || |||| | |||| || || || || ||||| | | Sbjct 27326 TGTCGATGGCCTCGTCGATGGAACTCCCGTGGATG----CCGACAGCAACTCGCATGAGC 27271 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGA 54594 ||||| || || | || ||| |||| ||| || ||||| ||||| Sbjct 27270 ATGTGTTGGGGGCGCTCGGCGACCTTGCCGTTGATGCGCAGCAGATAGGA 27221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593656253516400