Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689965.1_202016-07-20] 8,805 sequences; 43,736,635 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6382 120 3e-22 seq7298 118 1e-21 seq6491 114 1e-20 seq3785 111 2e-19 >seq6382 Length=53231 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 |||| || || | | ||| | |||||||| | ||| |||||||||||| ||||| | Sbjct 367 ATTGGCCACCACGGAGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGT 308 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | | || || || | || || |||||||| || ||||| || | |||||||||||| | Sbjct 307 CCGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCCG 248 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGAT 43130 || | || |||||||||| ||| | || || |||| | | | ||||| ||| Sbjct 247 GGGGGATGCCCTCCTTGTCC-TGAATCTTCGTCTTGACATTGTCGATGGTGTCTGATGAT 189 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| |||| |||||||| ||||| || || ||||| || || || ||||| Sbjct 188 TCCACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 136 >seq7298 Length=1044 Score = 118 bits (130), Expect = 1e-21 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||||||| |||||| || || ||||| || | || || || |||| || Sbjct 124 ACCAAATGCAATGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCGTCTTCA 183 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || | ||| || ||||| | || | || |||||||||| || Sbjct 184 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTGTCC-TG 242 Query 43095 ATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 | | || || |||| ||| | | | |||||| || || || |||| ||||| || | Sbjct 243 AATCTTGGTCTTGA-CGTTGTCGATAGTGTCGGAGGACTCAACTTCGAGTGTGATTGTCT 301 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| ||||| Sbjct 302 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 332 >seq6491 Length=17318 Score = 114 bits (126), Expect = 1e-20 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 4962 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 5021 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA--GC 43109 ||||||||||||||||| | || | | ||||||||| |||||| |||| || Sbjct 5022 GATGAGTCGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATTTTGGTCTTGACGGC 5081 Query 43110 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 |||| | | |||| || ||||| |||| ||||| || || ||||| || ||||| Sbjct 5082 GTCG--ATGGAGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTCAGGGTCTTG 5139 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 5140 ACGAAGATCTGCAT 5153 >seq3785 Length=5141 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | |||| |||||| || || ||||| || | || || || |||| || Sbjct 4952 ACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCG 4893 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || || ||||||||||| | || | || ||||||||| | Sbjct 4892 AGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 4833 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | |||||| ||||| || |||| |||||||| ||| Sbjct 4832 ATCTTGGTCTTGACATTGTCGATCGTGTCTGATGATTCAACTTCGAGTGTGATGGTCTTG 4773 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||| ||||| Sbjct 4772 CCGGTGAGGGTCTTGACGAAGATCTGCAT 4744 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || | || || | |||||| || ||||| Sbjct 373 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 432 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| || | || || | ||| Sbjct 433 GATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC-TGGATCTTCGTCTTCACGT 491 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| |||||||| || | |||||||| ||||| || || ||||| | Sbjct 492 TGTCGATGGTGTCTGATGATTCCACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTCTTCA 551 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 552 CGAAGATCTGCAT 564 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||||||| |||||| || || ||||| || | || || || |||| || Sbjct 584 ACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCCGACAATGTTCGGCCGTCCTCG 643 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || ||||| ||||||||||| | || | || |||||| || | Sbjct 644 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGG 703 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || ||| |||| ||| | | | ||||| || || || |||| |||||||| || Sbjct 704 ATCTTTGTCTTGA-CGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTT 762 Query 43154 GCCCGTTAGCGTCTTTAC 43171 ||| || || ||||| || Sbjct 763 GCCAGTCAGAGTCTTGAC 780 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| |||| ||||||||| || |||||||| | || || || |||| || Sbjct 4724 ACCAAGTGCAGTGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCG 4665 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || ||||| ||||| ||||||||||| | || | || ||||||||| | Sbjct 4664 AGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGG 4605 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | ||||| || || || || | |||||||| ||| Sbjct 4604 ATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCAAGGGTGATGGTCTTG 4545 Query 43155 CCCGTTAGCGTCTTTAC 43171 || || || ||||| || Sbjct 4544 CCAGTCAGAGTCTTAAC 4528 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || | || || | |||||| || ||||| Sbjct 129 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 188 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| || | || || | ||| Sbjct 189 GATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC-TGGATCTTCGTCTTCACGT 247 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGC-GTCTT 43168 | | | ||||| |||||||| || | |||||||| ||||| || || ||||| Sbjct 248 TGTCGATGGTGTCTGATGATTCCACCTCAAGAGTGATGGTCTTGCCGGTGAGNTGTCTT 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571754664325400