Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689965.1_202016-07-20] 8,805 sequences; 43,736,635 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq248 172 9e-38 >seq248 Length=52618 Score = 172 bits (190), Expect = 9e-38 Identities = 335/490 (68%), Gaps = 10/490 (2%) Strand=Plus/Minus Query 203845 CACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTT 203904 |||||||||||| |||||||| | ||||| | | ||| || ||||| | || ||||| Sbjct 29032 CACCGTGAACTGGATGGCGTTGGCAGCAGGTCGGGTTCGGAGGTAGTATGTTCCCGTCTT 28973 Query 203905 TAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGC 203964 | ||||||| ||| ||||| | ||||||| | || | || | | |||| | Sbjct 28972 CAATCCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTAAGCTGGCCAAAGCTGGGTGCTTG 28913 Query 203965 CATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATAT 204023 | ||| ||||||||| || |||| ||| |||||| || || || || ||||| | Sbjct 28912 GAGGTGGATGTTCAGACTTTGAGATTGGCAGAT-AAAGGCACCTCGGTCGGCAGCCATGT 28854 Query 204024 TGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAG 204083 ||| ||| ||||||||| ||||||||||| |||||| ||| | || || | | | Sbjct 28853 CGATGATGACCTTCTGCGAGATCTCCCACACTGTCTTGTACAGTGCCTTGATGCGGTCGG 28794 Query 204084 GCACATCTTCC---CACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 | | | || ||||| ||| ||||||||| || ||| || | | || || || Sbjct 28793 GAA----TGCCGGGCACGTTCTGAATCGAGCCGCCGTGGGCTATGATGCGGTTCTTCATC 28738 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | ||| ||||| || | || ||||| |||| ||| ||||||| || || Sbjct 28737 TGCTCGTTCCACAGACCTTGCTCGACAAGCTCACGCAGCAGCCAAGGGTTGACGACTTGG 28678 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || |||| ||||| | ||||||| | |||||| | ||| | || || || |||| Sbjct 28677 AACTCGCCGGCGAGCACACGTCGGGTGTAAAGGTTGCTCGTGTAAGGCTCAAAGCACTCG 28618 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 ||| ||||| |||||| || || |||||||| || || || || |||||||| Sbjct 28617 TTGAAGCCGAGGATCTGACTTGTCGAAGCGGTGGGCATAGGGGCGAGCAGGAGGGAGTTT 28558 Query 204320 CGCACACCGT 204329 || | ||||| Sbjct 28557 CGGAGACCGT 28548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795067683230800