Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq312 111 2e-19 >seq2 Length=120822 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || |||| || | |||||| || ||||| Sbjct 12525 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAA 12466 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| || | || || | ||| Sbjct 12465 GATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGGATCTTCGTCTTCACGT 12407 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| |||||||| |||| |||||||| ||||| || || ||||| | Sbjct 12406 TGTCGATAGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGA 12347 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 12346 CGAAGATCTGCAT 12334 Score = 116 bits (128), Expect = 4e-21 Identities = 154/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| |||||||||||| ||||| || | || || || |||| || Sbjct 6835 ACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCG 6894 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || | ||| |||||||| | || | || |||||||||| || Sbjct 6895 AGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCG-GGGGATGCCCTCCTTGTCC-TG 6952 Query 43095 ATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || || |||| | | | ||||| |||||||| |||| |||||||| || Sbjct 6953 AATCTTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTT 7012 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || || || ||||| Sbjct 7013 GCCGGTGAGGGTCTTGACGAAAATCTGCAT 7042 Score = 114 bits (126), Expect = 1e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCA-GAGTCCGCTCGTCATC 43033 ||||| ||||||||| |||||| || || ||||| || | | | || || |||| || Sbjct 12087 ACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAGAAGGGTTCGGCCGTCCTC 12028 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | || | || ||||||||| Sbjct 12027 GAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTG 11968 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || |||| | | | |||||| ||||| || |||| |||||||| || Sbjct 11967 GATCTTGGTCTTGACATTGTCGATCGTGTCTGATGATTCAACTTCGAGTGTGATGGTCTT 11908 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || ||||| ||||| Sbjct 11907 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 11878 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| |||| ||||||||| || |||||||| | || || || |||| || Sbjct 11858 ACCAAGTGCAGTGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCG 11799 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || ||||| ||||| ||||||||||| | || | || ||||||||| | Sbjct 11798 AGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGG 11739 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | ||||| || || || || | |||||||| ||| Sbjct 11738 ATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCAAGGGTGATGGTCTTG 11679 Query 43155 CCCGTTAGCGTCTTTAC 43171 || || || ||||| || Sbjct 11678 CCAGTCAGAGTCTTAAC 11662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||||||| |||||| || || ||||| || | || || || |||| || Sbjct 7746 ACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCG 7805 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || || ||||||||||| | || | || |||||| || | Sbjct 7806 AGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGG 7865 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || ||| |||| ||| | | | |||||| || || || || | |||||||| || Sbjct 7866 ATCTTTGTCTTGA-CGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGGGTGATGGTCTT 7924 Query 43154 GCCCGTTAGCGTCTTTAC 43171 | | || || ||||| || Sbjct 7925 G-CAGTCAGAGTCTTGAC 7941 >seq312 Length=215048 Score = 111 bits (122), Expect = 2e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 143679 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 143620 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA--GC 43109 ||||||||||| ||||| | || | | ||||||||| |||||| |||| || Sbjct 143619 GATGAGTCGCTGTTGGTCCGGTGGGATACCTTCCTTGTCCTGGATTTTGGTCTTGACGGC 143560 Query 43110 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 |||| | | |||| || ||||| |||| ||||| || || ||||| || ||||| Sbjct 143559 GTCG--ATGGAGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTCAGGGTCTTG 143502 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 143501 ACGAAGATCTGCAT 143488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814983934480