Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=120822 Score = 107 bits (118), Expect = 2e-18 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || |||||||| ||| |||||||||||||||||| || | || || || |||| || Sbjct 6835 ACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGA-AAGGGTGCGGCCGTCTTC 6893 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || || || ||||| ||| || | | ||||||||| Sbjct 6894 GAGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCGGGGG-ATGCCCTCCTTGTCCTG 6952 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| ||| ||||| | | ||||| || | || ||| ||||| ||| ||||| || Sbjct 6953 AATCTTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTT 7012 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || ||||||||||| Sbjct 7013 GCCGGTGAGGGTCTTGACGAAAATCTGCAT 7042 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | || || ||||| || |||||| || ||||||||||||| Sbjct 12561 ACCACCGCGCAGACGAAGAACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAGA 12502 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || ||||||||| |||||| ||| || | || | |||||||| ||| | Sbjct 12501 AAGAGTG-CGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAG 12443 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| || ||| ||| | | | || || || || | || || Sbjct 12442 GAATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCG--ATAGTGTCTGATGATTC 12385 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||| ||||| || |||||||| || || || || |||||||| Sbjct 12384 CACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||||||| ||||||||| |||||||| |||| | || |||| || Sbjct 12770 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCGTCTTCG 12711 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || || || || || ||| || | | ||||||||| | Sbjct 12710 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 12651 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | ||||| || | |||||| || | || || || || Sbjct 12650 ATCTTGGTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCAAGGGTGATTGTCTTG 12591 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || || |||||||| Sbjct 12590 CCGGTGAGGGTCTTGACGAAGATCTGCAT 12562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249320956366