Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 seq312 87.8 2e-12 >seq2 Length=120822 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| || ||||| || | ||| |||||| | ||| | ||||||| Sbjct 7518 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCC 7577 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || ||| | ||||| |||| || ||||| |||||||| || || ||||| | Sbjct 7578 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGG 7637 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| || | ||| ||||| | | ||||| || | ||||| || || Sbjct 7638 ATCTTGGTCTTTACATTGTCGATCGTGTCTGAGCTCTCGACTTCGAGAGTGATAGTCTTG 7697 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 7698 CCGGTGAGGGTCTTGACGAAGATCTGCAT 7726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| ||||| | |||| | |||||| Sbjct 12542 ACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCC 12483 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || ||| | ||||| | | ||||| || |||||||| || || ||||| | Sbjct 12482 AACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 12423 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| ||| | ||| |||||| | || || || | |||||||| || Sbjct 12422 ATCTTCGTCTTCACGTTGTCGATAGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTTG 12363 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 12362 CCGGTGAGGGTCTTGACGAAGATCTGCAT 12334 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 ||||||||||| || || ||||| || | ||| || ||| | || ||| | |||| Sbjct 12087 ACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAGA-AGGGTTCGGCCGTCCT 12029 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| |||||| | ||||| | | ||||| || ||||| || || || ||||| | Sbjct 12028 CGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTT 11969 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || | |||||| | ||| ||||| | || || || | |||||||| | Sbjct 11968 GGATCTTGGTCTTGACATTGTCGATCGTGTCTGATGATTCAACTTCGAGTGTGATGGTCT 11909 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || || ||||||||||| Sbjct 11908 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 11878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT--GGAATCCT 94856 ||||||||||| || || ||||| || | ||| || ||| | || ||| | |||| Sbjct 7746 ACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCG--GAGAGGGTTCGGCCGTCCT 7803 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| |||||| | ||||| | | ||||| || |||||||| || || || || | Sbjct 7804 CGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTT 7863 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || |||| ||||||| | | | ||||| | | || || |||| ||||||| | Sbjct 7864 GGATCTTTGTCTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGGGTGATGG-TC 7922 Query 94977 TTCCAGTAAGAGTTTTCAC 94995 || |||| ||||| || || Sbjct 7923 TTGCAGTCAGAGTCTTGAC 7941 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 ||||| || | || || |||||||| | ||| || || | ||| || | || | Sbjct 12770 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCG--TCTT 12713 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || ||| | ||||| |||| ||| || || |||||||| || || ||||| | Sbjct 12712 CGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCT 12653 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || | ||| || | ||| ||||| | ||||| |||| ||||| || | Sbjct 12652 GAATCTTGGTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCAAGGGTGATTGTCT 12593 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || || ||||||||||| Sbjct 12592 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12562 >seq312 Length=215048 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | || || || || || || |||||||| ||| Sbjct 143642 TCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCCGGTGGGATACCTTCCTTG 143583 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| | |||||||||| ||| | ||| | || || || | ||||| Sbjct 143582 TCCTGGATTTTGGTCTTGACGGCGTCGATGGAGTCGGAAGACTCCACCTCGAGGGTGATA 143523 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || || || || || || || |||||||||||||| Sbjct 143522 GTCTTACCCGTCAGGGTCTTGACGAAGATCTGCATGCT 143485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289149067760