Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq337 140 2e-28 seq273 140 2e-28 seq252 140 2e-28 seq236 140 2e-28 seq205 140 2e-28 seq2 109 4e-19 seq295 98.7 7e-16 seq294 89.7 3e-13 >seq337 Length=194529 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 187332 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 187273 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 187272 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 187238 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 185336 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 185277 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 185276 CCCAATATTTAGCTTTA 185260 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 193639 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 193580 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 193579 CCCAATATTTAGCTTTA 193563 >seq273 Length=13479 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 13049 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 13108 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 13109 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 13143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 62/69 (90%), Gaps = 5/69 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2301 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2360 Query 25957 TAATCCTTT 25965 |||||| || Sbjct 2361 TAATCCATT 2369 >seq252 Length=15500 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 10799 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 10858 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 10859 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 10893 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 12795 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 12854 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 12855 CCCAATATTTAGCTTTA 12871 >seq236 Length=17489 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 7644 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7703 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7704 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7738 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 15948 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 16007 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 16008 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 16042 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1336 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1395 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 1396 CCCAATATTTAGCTTTA 1412 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 9640 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 9699 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 9700 CCCAATATTTAGCTTTA 9716 >seq205 Length=22153 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6767 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6708 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6707 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6673 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 15066 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 15007 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 15006 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 14972 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 4771 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 4712 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 4711 CCCAATATTTAGCTTTA 4695 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 21374 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 21315 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 21314 CCCAATATTTAGCTTTA 21298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 13068 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 13009 Query 20007 GGTAATATTTAGCCTTA 20023 |||| ||||| ||| Sbjct 13008 CCCAATA-TTAGCTTTA 12993 >seq2 Length=120822 Score = 109 bits (120), Expect = 4e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38084 ATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 |||||| ||||| | | ||| | ||||||||||| ||| ||||||||| || |||| Sbjct 12796 ATCATTGGCCACCGCGGAGACGGAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGT 12737 Query 38143 AATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202 | ||||| | | |||| |||| || | || || ||||| || || | |||||||| | Sbjct 12736 AGTCAGAGAGAGTACGTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGT 12677 Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC 38262 | | || | ||| || |||||| ||| || ||||||||| | || || ||| | Sbjct 12676 CCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGTCTTCACATTGTCGATGGTGTCTGAAG 12617 Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| | || || || || || || | ||| || ||||| |||||||| Sbjct 12616 ACTCGACTTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12562 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| ||||| || |||||| || || |||||||||| Sbjct 12562 TACCACCGCGCAGACGAAGAACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAG 12503 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || |||| || || || || ||||| || || ||||| || || || | | Sbjct 12502 AAAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAG 12443 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || |||||| || || |||||| || | || ||| ||| ||| | Sbjct 12442 GAATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCGATAGTGTCTGATGATTCCA 12383 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 12382 CCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 38085 TCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTA 38143 |||||| ||||| | | ||| | ||||||||||||||| |||||||||||| ||||| Sbjct 6810 TCATTAGCCACCACGGAGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTA 6869 Query 38144 ATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATC 38203 || || | || |||| || | || || || || || || | ||||| || || Sbjct 6870 GTCCGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTC 6929 Query 38204 GGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACT 38263 | ||||| ||| || |||||| ||| || ||| ||||| | | || ||| Sbjct 6930 CG-GGGGATGCCCTCCTTGTCCTGAATCTTCGTCTTGACATTGTCAATGGTGTCTGATGA 6988 Query 38264 TTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 6989 TTCCACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7042 >seq295 Length=2276 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 964 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 905 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 904 CCCAATATTTAGCTTTA 888 >seq294 Length=3374 Score = 89.7 bits (98), Expect = 3e-13 Identities = 58/64 (91%), Gaps = 5/64 (8%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 776 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 835 Query 25957 TAAT 25960 |||| Sbjct 836 TAAT 839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945705926146