Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq296 107 2e-18 seq2 102 7e-17 seq359 89.7 4e-13 seq312 82.4 6e-11 >seq296 Length=257219 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || | || | || ||||||||||| |||||||| ||| Sbjct 193620 ACCGCCACGGAGACGGAGGACGAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCGGA 193561 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||||| || || || || ||| |||||||||| |||||||| || || Sbjct 193560 TAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCTGGGGG 193501 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| ||||| || | | |||| ||||||| ||| || || Sbjct 193500 GATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGAGGACTCTAC 193441 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | || ||||| || || || || ||||| ||||||||| Sbjct 193440 CTCGAGGGTGATGGTCTTGCCTGTGAGTGTCTTGACAAAGATCTGCATG 193392 >seq2 Length=120822 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || ||||| |||||||| || | |||||| ||||| Sbjct 12770 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCGTCTTCG 12711 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| |||| | || |||||||||||||||||||| || ||||| | Sbjct 12710 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 12651 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | |||||| | || ||||| || | ||| | || ||| Sbjct 12650 ATCTTGGTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCAAGGGTGATTGTCTTG 12591 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || || || |||||||| Sbjct 12590 CCGGTGAGGGTCTTGACGAAGATCTGCAT 12562 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || ||||| |||||||||||| Sbjct 11879 ATACCACCACGCAGGCGGAGGACCAAGTGCAGTGTGGACTCCTTTTGGATGTTGTAATCG 11820 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || ||||| || || ||| ||||||| ||||| ||||||||| Sbjct 11819 GAAAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGA 11760 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| |||||| | || || Sbjct 11759 GGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGACTCA 11700 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | ||| | || ||||| |||||||| || || Sbjct 11699 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTAAC 11662 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||| ||| Sbjct 7725 ATACCACCACGAAGGCGGAGAACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCG 7784 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || || ||| |||| |||||||| ||||||||| Sbjct 7785 GAGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCCGGA 7844 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || |||||| || | | |||| |||||||| ||| || Sbjct 7845 GGAATGCCCTCCTTATCTTGGATCTTTGTCTTGACGTTGTCAATGGTGTCGGAGGACTCA 7904 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | ||| | || ||| | |||||||| || || Sbjct 7905 ACCTCAAGGGTGATGGTCTTG-CAGTCAGAGTCTTGAC 7941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||| || || | ||| || || || || ||||||||||| Sbjct 12563 ATACCACCGCGCAGACGAAGAACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCA 12504 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || || | || || || ||| ||||||| ||||| ||||||||| Sbjct 12503 GAAAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGA 12444 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | || | ||||| | ||||| Sbjct 12443 GGAATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCGATAGTGTCTGATGATTCC 12384 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||| || || || || || |||||||| Sbjct 12383 ACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12334 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | || ||||| | || || || |||||||||||||| || Sbjct 6817 CCACCACGGAGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGAA 6876 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||||| || || || || ||| |||| | || || |||||||| ||| Sbjct 6877 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCGGGGGA 6936 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||| || ||||| |||||| || | | |||| |||||| | ||||| || Sbjct 6937 -TGCCCTCCTTGTCCTGAATCTTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACC 6995 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || |||||||| || || || || ||||||||||| Sbjct 6996 TCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7042 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | || || || || || |||||||||||| Sbjct 7041 ATACCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCG 7100 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || | || || || ||| |||| | || |||||||||||| Sbjct 7101 GAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGA 7160 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| |||| | || | ||||||| | || Sbjct 7161 GGAATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATTGTCGATCGTGTCGGAGCTCTCC 7220 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||| || || || || ||||||||||| Sbjct 7221 ACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7270 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | || || || || || |||||||||||| Sbjct 7269 ATACCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCG 7328 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || | || || || ||| |||| | || |||||||||||| Sbjct 7329 GAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGA 7388 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| |||| | || | ||||||| | || Sbjct 7389 GGAATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATTGTCGATCGTGTCGGAGCTCTCC 7448 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||| || || || || ||||||||||| Sbjct 7449 ACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7498 >seq359 Length=210429 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||| ||| || || || || || || Sbjct 42501 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCG 42442 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||||||||||||||| || || ||||| ||||| ||| || || || Sbjct 42441 GCGAAGATGAGACGCTGTTGGTCCGGGGGGATACCTTCCTTGTCCTGGATC-TTGGTCTT 42383 Query 114306 AGCTG-TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | || ||||| || ||||| || | ||| | ||| |||||||| || || Sbjct 42382 GACGGCGTCGATGGAGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGT 42323 Query 114365 TTTTAC 114370 || || Sbjct 42322 CTTGAC 42317 >seq312 Length=215048 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | |||||| || || || || || || Sbjct 143684 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCG 143625 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| |||||||||||||| || || ||||| ||||| || ||| || || Sbjct 143624 GCGAAGATGAGTCGCTGTTGGTCCGGTGGGATACCTTCCTTGTCCTGGAT-TTTGGTCTT 143566 Query 114306 AGCTG-TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | || ||||| || || || || | ||| | || || || ||||| || Sbjct 143565 GACGGCGTCGATGGAGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTCAGGGT 143506 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 143505 CTTGACGAAGATCTGCATG 143487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132525937992