Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 seq198 118 1e-21 seq296 86.0 6e-12 >seq2 Length=120822 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||||||| Sbjct 7500 CCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 7559 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||| || || ||| ||||||||||||| ||||| ||||| Sbjct 7560 AGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGATCCGGAGGA 7619 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||||||||| Sbjct 7620 ATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATTGTCGATCGTGTCTGAGCTCTCGACT 7679 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||| || || || || || |||||||| Sbjct 7680 TCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 7726 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||||||| Sbjct 7044 CCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 7103 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||| || || ||| |||||||||| || || || ||||| Sbjct 7104 AGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGA 7163 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||||| || Sbjct 7164 ATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATTGTCGATCGTGTCGGAGCTCTCCACC 7223 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| || || || || ||||||||||| Sbjct 7224 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7270 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||||||| Sbjct 7272 CCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 7331 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||| || || ||| |||||||||| || || || ||||| Sbjct 7332 AGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGA 7391 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||||| || Sbjct 7392 ATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATTGTCGATCGTGTCGGAGCTCTCCACC 7451 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| || || || || ||||||||||| Sbjct 7452 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7498 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||||| | || ||||| ||||| || ||||| || Sbjct 12788 CCACCGCGGAGACGGAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAG 12729 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||||||||| || || || ||||| Sbjct 12728 AGAGTACGTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGA 12669 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||| | | |||| |||||| | | ||||||| Sbjct 12668 ATGCCCTCCTTGTCCTGAATCTTGGTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 12609 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| || || || || || |||||||| Sbjct 12608 TCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12562 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || ||||| |||||||| ||||| || Sbjct 6817 CCACCACGGAGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGAA 6876 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||||||| ||||| || || || Sbjct 6877 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCGGGGG- 6935 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||||| | || | |||||| | || || Sbjct 6936 ATGCCCTCCTTGTCCTGAATCTTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACC 6995 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||| || || || || ||||||||||| Sbjct 6996 TCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7042 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || || || |||||||| Sbjct 12560 CCACCGCGCAGACGAAGAACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAGAA 12501 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | ||| || || ||| |||| | |||||||| || ||||| Sbjct 12500 AGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 12441 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| ||| | |||| |||| ||||| | || || Sbjct 12440 ATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTG-TCGATAGTGTCTGATGATTCCAC 12382 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||| || || || || || |||||||| Sbjct 12381 CTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||||||| Sbjct 11876 CCACCACGCAGGCGGAGGACCAAGTGCAGTGTGGACTCCTTTTGGATGTTGTAATCGGAA 11817 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || || ||| |||| | |||||||| || ||||| Sbjct 11816 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 11757 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||||| | || | |||||| | | ||| || Sbjct 11756 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGACTCAACC 11697 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || ||||| |||||||| || || Sbjct 11696 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTAAC 11662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 12105 CCACCACGAAGGCGGAGAACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAG 12046 Query 126947 ATCG-TGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | | | || || || ||||| ||||| ||| |||| | |||||||| || ||||| Sbjct 12045 AAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGAGG 11986 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||||| | |||| ||||| | || || Sbjct 11985 GATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATCGTGTCTGATGATTCAAC 11926 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | || |||||||| || || || || || |||||||| Sbjct 11925 TTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 11878 >seq198 Length=283761 Score = 118 bits (130), Expect = 1e-21 Identities = 316/480 (66%), Gaps = 15/480 (3%) Strand=Plus/Plus Query 47084 AAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTT 47143 |||||||||||||||| || | || | |||| || |||| | ||||| || | Sbjct 154041 AAAGGCCGAGTGGGCCCTGCGCTGGATCAACGACGAGGACTCCACTTTTGCCGAGCGCCT 154100 Query 47144 GATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTA 47203 | | || || || ||| |||||| |||||||||| ||| || || | || || | Sbjct 154101 GGTTGCCTTTGCTGCCGTAGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTG 154160 Query 47204 CATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGA 47263 | || | || | |||||||| ||||| || ||||||||| ||| |||| Sbjct 154161 GCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCAGCCGAGA 154220 Query 47264 CGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAAC-ACTAGAGTCGATCAAAAGT 47322 ||| || ||||||||| ||||||| || | || || | || |||| | Sbjct 154221 CGAGGGTCTGCACACCGACTTTGCTTGCTTGCTCTTCAGCCACC--------TCAAGAAG 154272 Query 47323 TGGACGTGCCCAC----CGT-CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGA 47377 || || ||| ||| | ||| ||| ||||||| | ||| |||||||| || Sbjct 154273 CGGCCGCACCCCGATGTCGTTCTGCG-CATCATTGCCGAGTCTGTCACCATTGAGCAGGC 154331 Query 47378 GTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAA 47437 || | |||| ||||| ||| || || | || |||||||| | ||||| | Sbjct 154332 TTTCCTGACCGATGCTCTTCCCTGTTCATTGATCGGCATGAACGCACGACTTATGAGCCA 154391 Query 47438 GTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCA 47497 ||||||||| |||||||| ||||| ||||| || || | | ||| ||| | Sbjct 154392 GTACATCGAGTTTGTCGCTGACCGACTGCTGGTAGCCCTCGGGAACGAGAAGCACTACAA 154451 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACttttt 47557 | || ||||| ||||| || ||| | ||||||||||| | |||||||| ||||| || Sbjct 154452 CGCCACAAATCCCTTCGACTTCATGGAGAACATTTCGCTGCAAGGCAAGACAAACTTCTT 154511 >seq296 Length=257219 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| || ||||| ||| | ||| || || || ||||| || || Sbjct 193589 GTGGATTCTTTTTGGATGTTGTAGTCGGATAGCGTTCGGCCGTCTTCGAGCTGCTTGCCG 193530 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || || || || || || |||||||||||||| ||| || |||| Sbjct 193529 GCGAAGATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGTCTTG 193470 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | ||| || |||| ||| | || ||||| || || || Sbjct 193469 ACGTTG-TCAATCGTGTCGGAGGACTCTACCTCGAGGGTGATGGTCTTGCCTGTGAGTGT 193411 Query 127096 TTTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 193410 CTTGACAAAGATCTGCATG 193392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498624583840