Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 9e-16 >seq2 Length=120822 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || | || || || || ||||| ||||| || |||||| Sbjct 7041 ATACCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCG 7100 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | ||||||||||| |||||||| Sbjct 7101 GAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGA 7160 Query 45231 GGAATGCCTTCTTTATCTTGAATTTT--TTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 |||||||| || || || || || || | || || | || | |||||||| || Sbjct 7161 GGAATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATTG--TCGATCGTGTCGGAGCTCT 7218 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| | || |||||||| || || || || ||||| ||||| Sbjct 7219 CCACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7270 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || | || || || || ||||| ||||| || |||||| Sbjct 7269 ATACCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCG 7328 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | ||||||||||| |||||||| Sbjct 7329 GAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGA 7388 Query 45231 GGAATGCCTTCTTTATCTTGAATTTT--TTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 |||||||| || || || || || || | || || | || | |||||||| || Sbjct 7389 GGAATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATTG--TCGATCGTGTCGGAGCTCT 7446 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| | || |||||||| || || || || ||||| ||||| Sbjct 7447 CCACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7498 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || | ||| || || || ||||||||||| || || || | Sbjct 12788 CCACCGCGGAGACGGAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAG 12729 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || || || ||| | ||||||||||| |||||||| ||| Sbjct 12728 AGAGTACGTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGA 12669 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || ||||| || || | || | |||||| |||||||||||| Sbjct 12668 ATGCCCTCCTTGTCCTGAATCTTGGTCTTCACATTGTCGATGGTGTCTGAAGACTCGACT 12609 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || |||||||| || || || || || || ||||| Sbjct 12608 TCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12562 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || | || || || || ||||| ||||| || |||||| Sbjct 7497 ATACCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCG 7556 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | |||||||| || || ||||| Sbjct 7557 GAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGATCCGGA 7616 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTT-TGTTTG-ATCGCTTCTACGGTGTCGGAAGACT 45288 |||||||| || || || || || || | ||| || | || | ||||| || || Sbjct 7617 GGAATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATTG--TCGATCGTGTCTGAGCTCT 7674 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| | || |||||||| || || || || || || ||||| Sbjct 7675 CGACTTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 7726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | |||||||||||||||||||| || ||||| || || || ||||| Sbjct 6898 TGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCGG-GGGATGCCCTCCTTGTCCTGAATC 6956 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| || | |||||| || || || || ||||| || | || |||||| Sbjct 6957 TTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTTGCCG 7016 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| ||||| Sbjct 7017 GTGAGGGTCTTGACGAAAATCTGCAT 7042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||| ||||| || || ||| || |||| || || | || Sbjct 7752 TGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGC 7811 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | || ||||||||||| |||||||| || |||||||| || ||| Sbjct 7812 TTTCCGGCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGGATCTTT 7871 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||||||| ||||| || || || || | || ||| | || Sbjct 7872 GTCTTGA-CGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGGGTGATGGTCTTG-CAGT 7929 Query 45317 TAGAGTTTTTAC 45328 ||||| || || Sbjct 7930 CAGAGTCTTGAC 7941 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || || ||||||||||| || |||||| | ||| || || | ||| Sbjct 11852 TGCAGTGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCGAGTTGC 11793 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | || ||||||||||| |||||||| || || ||||| || || Sbjct 11792 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTG 11733 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | |||||| |||||||| || || || || | || ||||| || Sbjct 11732 GTCTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCAAGGGTGATGGTCTTGCCAGTC 11673 Query 45318 AGAGTTTTTAC 45328 ||||| || || Sbjct 11672 AGAGTCTTAAC 11662 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || || || || || || ||||| ||||| || || ||| Sbjct 12335 ATACCACCGCGGAGACGGAGAACAAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCG 12276 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || ||||| || || || ||| | || | || || |||||||| Sbjct 12275 GAGAGGGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGG 12216 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||| | || || || ||||| || || || | || | || | ||||| || ||||| Sbjct 12215 GGA-TACCCTCCTTGTCTTGGATCTTCGTCTTCA-CGTTGTCGATCGTGTCTGAGGACTC 12158 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| | || |||||||| || || || || || || ||||| Sbjct 12157 GACTTCAAGAGTGATTGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 12107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001132085360