Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2 102 6e-17 seq312 84.2 2e-11 >seq2 Length=120822 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || ||||| ||| || || || ||||||||||| ||| | || |||| ||| Sbjct 12542 ACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCC 12483 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| ||||| || || || ||||| || |||| |||| |||||||||||| Sbjct 12482 AACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 12423 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | || ||||| | |||||||| | || || || || Sbjct 12422 ATCTTCGTCTTCACGTTGTCGATAGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTTG 12363 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 12362 CCGGTGAGGGTCTTGACGAAGATCTGCAT 12334 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| ||| ||||| || ||||| ||||| ||| | || |||| || Sbjct 12770 ACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCGTCTTCG 12711 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || |||| ||| ||||| |||| |||| |||||||||||| | Sbjct 12710 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 12651 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | ||||| | ||| || || | || || || || Sbjct 12650 ATCTTGGTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCAAGGGTGATTGTCTTG 12591 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 12590 CCGGTGAGGGTCTTGACGAAGATCTGCAT 12562 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || |||||||| || || | || | || ||| Sbjct 7062 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCC 7121 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| ||||| || |||| ||| ||||| |||| |||| |||||||||||| Sbjct 7122 AACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 7181 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | | || || ||||||||| | || || || || Sbjct 7182 ATCTTGGTCTTTACATTGTCGATCGTGTCGGAGCTCTCCACCTCAAGAGTGATGGTCTTG 7241 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || ||||||||||| Sbjct 7242 CCGGTGAGGGTCTTGACGAAAATCTGCAT 7270 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || |||||||| || || | || | || ||| Sbjct 7290 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCC 7349 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| ||||| || |||| ||| ||||| |||| |||| |||||||||||| Sbjct 7350 AACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 7409 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | | || || ||||||||| | || || || || Sbjct 7410 ATCTTGGTCTTTACATTGTCGATCGTGTCGGAGCTCTCCACCTCAAGAGTGATGGTCTTG 7469 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || ||||||||||| Sbjct 7470 CCGGTGAGGGTCTTGACGAAAATCTGCAT 7498 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || |||||||| || || | || | || ||| Sbjct 7518 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCC 7577 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| ||||| || |||| |||||||||||||| |||| |||||||||||| Sbjct 7578 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGG 7637 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | | ||||| ||| || || | || || || || Sbjct 7638 ATCTTGGTCTTTACATTGTCGATCGTGTCTGAGCTCTCGACTTCGAGAGTGATAGTCTTG 7697 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 7698 CCGGTGAGGGTCTTGACGAAGATCTGCAT 7726 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| ||| |||||||| ||||| || || || | || |||| || Sbjct 6835 ACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCG 6894 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || |||| ||| || || |||| |||| |||||||||||| | Sbjct 6895 AGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCGGGGGAT-GCCCTCCTTGTCCTGA 6953 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | ||||| | |||||||| | || || || || Sbjct 6954 ATCTTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTTG 7013 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || ||||||||||| Sbjct 7014 CCGGTGAGGGTCTTGACGAAAATCTGCAT 7042 >seq312 Length=215048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || || ||| | || |||| || | |||||| ||||| || Sbjct 143679 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 143620 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAG 48693 || ||||||||||| |||| || | || |||||||| || ||| || || || | Sbjct 143619 GATGAGTCGCTGTTGGTCCGGTGGGATACCTTCCTTGTC-CTGGATTTTGGTCTTGACGG 143561 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | || || || | ||||||||| | || || || || ||||||| || || | Sbjct 143560 CGTCGATGGAGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTCAGGGTCTTGA 143501 Query 48754 CAAAAATCTGCAT 48766 | || |||||||| Sbjct 143500 CGAAGATCTGCAT 143488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935900780218