Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 2e-15 >seq2 Length=120822 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || || || ||| || || ||||||||||| || Sbjct 12561 ACCACCGCGCAGACGAAGAACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAGA 12502 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| ||||| || || ||||| || || | |||||||| || | || Sbjct 12501 AAGAGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGG 12442 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| || | || | ||| | ||||| |||||||| Sbjct 12441 AATGCCCTCCTTGTCCTGGATCTTC-GTCTTCACGTTGTCGATAGTGTCTGATGATTCCA 12383 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 12382 CCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 12333 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||| || ||| ||| ||||| |||||||| || ||| Sbjct 12788 CCACCGCGGAGACGGAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAG 12729 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| |||| || | || || ||||| || ||||| || || || || | || Sbjct 12728 AGAGTACGTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGA 12669 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || |||| ||| ||| | |||||| || || || Sbjct 12668 ATGCCCTCCTTGTCCTGAATCTTGGTCTTCA-CATTGTCGATGGTGTCTGAAGACTCGAC 12610 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | || || || |||||||||||| Sbjct 12609 TTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 12561 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| ||| || || |||||||||||||| Sbjct 7499 ACCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 7558 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| || || ||||| || ||||| ||||| ||||| | || Sbjct 7559 AAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGATCCGGAGG 7618 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || || ||||| || || || | |||| ||| | ||||| ||| | Sbjct 7619 AATGCCCTCCTTGTCCTGGATCTT-GGTCTTTACATTGTCGATCGTGTCTGAGCT---CT 7674 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| || || || || | || || || |||||||||||| Sbjct 7675 CGACTTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 7727 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| ||| || || |||||||||||||| Sbjct 7043 ACCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 7102 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| || || ||||| || ||||| || || || || | || Sbjct 7103 AAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGG 7162 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || || | |||| ||| | |||||| |||| Sbjct 7163 AATGCCCTCCTTGTCCTGGATCTT-GGTCTTTACATTGTCGATCGTGTCGGAGCTCTCCA 7221 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || || || ||||||||| Sbjct 7222 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATA 7271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| ||| || || |||||||||||||| Sbjct 7271 ACCACCGCGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 7330 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| || || ||||| || ||||| || || || || | || Sbjct 7331 AAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGG 7390 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || || | |||| ||| | |||||| |||| Sbjct 7391 AATGCCCTCCTTGTCCTGGATCTT-GGTCTTTACATTGTCGATCGTGTCGGAGCTCTCCA 7449 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || || || ||||||||| Sbjct 7450 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATA 7499 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||||||| ||||| |||| ||||| || Sbjct 12308 TGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAACTGC 12249 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||| || || | || | ||| || ||||| || ||| Sbjct 12248 TTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGGGG-ATACCCTCCTTGTCTTGGATCTTC 12190 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| | | ||| | ||||| || || || |||| ||||| || || || || Sbjct 12189 GTCTTCA-CGTTGTCGATCGTGTCTGAGGACTCGACTTCAAGAGTGATTGTCTTGCCGGT 12131 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | ||| || || |||||||||||| Sbjct 12130 GAGCGTCTTGACGAAGATCTGCATA 12106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702533774720