Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq198 172 8e-37 seq342 109 8e-18 seq187 95.1 2e-13 >seq198 Length=283761 Score = 172 bits (190), Expect = 8e-37 Identities = 221/297 (74%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||| ||||| || || ||||| ||||| |||||||| ||| | ||||| | Sbjct 153931 GAGAACATTCACTCCGAGACATACTCCCTCCTCATCGACACATACATTCGCGACCCCGCA 153990 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAGGCCGA 1456133 || || ||||||| |||||| || || | || |||| | | | |||||||||| Sbjct 153991 CAGCGCGAGTACCTCTTCGACGCCATGGAGACCATTCCCGTCG-TCAAGCAAAAGGCCGA 154049 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 ||||| || ||||||||| | |||| | || || ||||||||||| || || | | Sbjct 154050 GTGGGCCCTGCGCTGGATCAACGACGAGGAC-TCCACT-TTTGCCGAGCGCCTGGTTGCC 154107 Query 1456194 TTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| || || ||||||||||| ||||| ||| |||| | ||||||| ||||||||| Sbjct 154108 TTTGCTGCCGTAGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAG 154167 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||| || ||||||||||||| || ||| |||||| | ||||| || ||||| Sbjct 154168 AAGCGTGGTCTCATGCCCGGTC-TCACCTTCTCCAACGAGCTCATCAGCCGAGACGA 154223 Score = 116 bits (128), Expect = 5e-20 Identities = 170/237 (72%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| || || ||||| ||||||||| |||||| Sbjct 153614 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCATCGTTCTGGACGGCCGAGGAGATCGACC 153672 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| | ||| |||| ||||||| || ||||||| Sbjct 153673 TTTCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAACGAGCGACACTTCATCA 153732 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||| | || ||||| || ||||||||||| ||||||||| | || Sbjct 153733 GCCACGTCCTCG-CATTCTTCGCTGCGTCAGATGGCATCGTCAACGAGAACCTCGTCGAG 153791 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | ||||||||| ||||||| || | || ||||| ||||| ||| Sbjct 153792 CGGTTCAGCTCAGAGGTCCAGGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAAATC 153848 >seq342 Length=148323 Score = 109 bits (120), Expect = 8e-18 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||||||||||||| || | | ||| || |||||| | Sbjct 80007 ATCTACCGTGTCCTCAAGCAGGTGCACCCCGACACTGGT-----ATC-TCAAACAAGGCT 79954 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| ||||||| || ||| | ||||| |||| ||||||| |||||||| Sbjct 79953 ATGGCCATCCTGAACTCCTTCGTCCAAGACATCTTCGAGCGCATCGCATCCGAGGCCTCC 79894 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || ||||||| || ||| | ||||||||||| |||||||| Sbjct 79893 AAGCTTGCATCCTACAACAAGAAGTCGACCATCTCTGCCCGCGAGATCCAAACCGCCGTC 79834 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | ||| ||||| ||| ||||||| |||| ||||| |||| Sbjct 79833 CGACTTATCCTCCCCGGTGAACTCTCCAAGCACGCCATCTCTGAGGGTACCA 79782 >seq187 Length=285173 Score = 95.1 bits (104), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||| || |||||| || | | ||| ||||||||| || Sbjct 99142 ATCTACCGTGTCCTCAAGCAAGTCCACCCCGACACTGGT-----ATC-TCCAACAAGGCC 99089 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | ||||| || || | ||||| |||| ||||||| |||| || Sbjct 99088 ATGGCCATCCTCAACTCCTTCGTACAAGACATCTTCGAGCGCATCGCATCCGAAGCTTCC 99029 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || | ||||||| | ||| ||| | | ||||||||||| || ||||| Sbjct 99028 AAACTCGCATCATACAACAAGAAGAGCACCATCTCCGCACGCGAGATCCAAACAGCCGTC 98969 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | ||| ||||| ||| ||||||| |||| ||||| |||| Sbjct 98968 CGACTCATCCTCCCCGGTGAACTCTCCAAGCACGCCATCTCGGAGGGGACCA 98917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177775898627292