Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=120822 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||| || ||||||||||| | | || || |||| ||| Sbjct 12542 ACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCC 12483 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | |||||| || || || || | ||||||||||||| ||||| || |||||||||| | Sbjct 12482 AACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 12423 Query 35648 ATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||||| |||| | | ||||| ||||||||||| | ||||| || || Sbjct 12422 ATCTTCGTCTTCAC-GTTGTCGATAGTGTCTGATGATTCCACCTCGAGTGTGATGGTCTT 12364 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || || || |||||||| Sbjct 12363 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 12334 Score = 113 bits (124), Expect = 4e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | || |||||||||||||||||| || | Sbjct 6817 CCACCACGGAGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGAA 6876 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| ||||| || ||||| || |||||||||| || Sbjct 6877 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCG-GGGG 6935 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| ||||| ||| | | | | | ||||| ||||||||| Sbjct 6936 ATGCCCTCCTTGTCCTGAATCTTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACC 6995 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | || || || || |||||||| Sbjct 6996 TCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7042 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | ||| || | || |||| |||||| || || || Sbjct 7079 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 7138 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || || ||||||| ||||| || |||||||||| |||||| ||| | | | Sbjct 7139 GATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATT 7198 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| |||| |||||||| | ||||| || || || || | || || Sbjct 7199 GTCGATCGTGTCGGAGCTC---TCCACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTT 7255 Query 35722 CACAAATATCTGCAT 35736 || || |||||||| Sbjct 7256 GACGAAAATCTGCAT 7270 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | ||| || | || |||| |||||| || || || Sbjct 7307 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 7366 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || || ||||||| ||||| || |||||||||| |||||| ||| | | | Sbjct 7367 GATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATT 7426 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| |||| |||||||| | ||||| || || || || | || || Sbjct 7427 GTCGATCGTGTCGGAGCTC---TCCACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTT 7483 Query 35722 CACAAATATCTGCAT 35736 || || |||||||| Sbjct 7484 GACGAAAATCTGCAT 7498 Score = 105 bits (116), Expect = 6e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || || || |||||| || |||||||| |||| Sbjct 12105 CCACCACGAAGGCGGAGAACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAG 12046 Query 35570 AAGG-TTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 |||| |||| |||| || |||||||| || || || || | ||||||||||||| ||| Sbjct 12045 AAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGAGG 11986 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| |||||| ||| | | | | | |||||| ||||| || Sbjct 11985 GATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATCGTGTCTGATGATTCAAC 11926 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | || || || || |||||||| Sbjct 11925 TTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 11878 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | ||| || | || |||| |||||| || || || Sbjct 7535 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 7594 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||| || |||| ||||| || |||||||||| |||||| ||| | | | Sbjct 7595 GATCAATCGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTTACATT 7654 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| |||| || || || | ||||| || || || || | || || Sbjct 7655 GTCGATCGTGTCTGAGCTC---TCGACTTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTT 7711 Query 35722 CACAAATATCTGCAT 35736 || || |||||||| Sbjct 7712 GACGAAGATCTGCAT 7726 Score = 100 bits (110), Expect = 3e-16 Identities = 154/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || || || |||||| || |||||||| |||| Sbjct 7728 CCACCACGAAGGCGGAGAACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAG 7787 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| |||| || |||||||| || || || || | ||||||||||||| |||| Sbjct 7788 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCCGGAGGA 7847 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||| || ||||||| ||| | |||| | | |||||| || || || Sbjct 7848 ATGCCCTCCTTATCTTGGATCTTTGTCTTGA-CGTTGTCAATGGTGTCGGAGGACTCAAC 7906 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 ||| | ||||| || || | |||| ||| || || Sbjct 7907 CTCAAGGGTGATGGTCTT-GCAGTCAGAGTCTTGAC 7941 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| ||||||||||||| | ||| || |||| || || ||||| || || || Sbjct 11841 CTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 11782 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| ||||| || ||||||||| |||||| ||| | | | Sbjct 11781 GATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 11722 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | ||||| || || || |||| ||| || || Sbjct 11721 GTCAATGGTGTCTGAAGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTAAC 11662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791537619280