Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq32 279 6e-70 seq221 98.7 1e-15 >seq32 Length=96279 Score = 279 bits (308), Expect = 6e-70 Identities = 480/689 (70%), Gaps = 6/689 (1%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||||||| || || ||| | || ||||| |||||||||||||| ||||||| ||| Sbjct 31794 AAGTACTTCACCCATGCCTCCCCCACCCTCTTCAACGCTGGTACACCCAACCCTCAAATG 31853 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||||||||| | |||||||| ||||||||||||||||||||||| || ||| Sbjct 31854 TCATCGTGCTTCCTGGTCACCATGAAGGACGACTCGATCGACGGCATCTACGACACTCTC 31913 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTC 53446 ||| || ||| ||| |||| | | ||||| ||||| || || | | || Sbjct 31914 AAGACCTGCGCCATGATCAGCAAGACGGCTGGTGGCATCGGCCTCAACATCCACTGCATC 31973 Query 53447 CGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATG 53506 |||| | |||| || || || || ||||| ||| | | || |||||||||||| Sbjct 31974 CGTGGTACCGGCTCATACATTGCCGGAACTAACGGTGTCTCTAACGGTATCGTGCCTATG 32033 Query 53507 CTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGG 53565 || ||||||||||||||||| || || |||||| | |||||||| ||||| | ||| Sbjct 32034 CTTCGCGTCTTCAACAACACCGCTCGCTACGTCGATCAGGGTGGCAACAAGCGTCCAGGT 32093 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | | |||||||||||| | ||||| |||||| | ||| | | ||||| ||||| || | Sbjct 32094 G-CCTTCGCCATCTACATTGAGCCCTGGCACTCTGACGTCTTCGAGTTCCTCGACCTCAG 32152 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTC 53684 ||| || || | || ||| | || |||||| || || ||| || || ||||| | Sbjct 32153 GAAGAACCACGGCAAGGAGGAGGTCCGAGCCCGTGAGCTCTTCTAC-GCCCTTTGGATCC 32211 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | ||| | |||||| | || || || ||| ||||||| ||||||||||| | Sbjct 32212 CTGACTTGTTCATGAAGCGAGTCGAACAGAACGGAGAGTGGTCGCTGATGTGCCCCGCTG 32271 Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804 |||||||||| ||| | ||||||||| || ||||| | | | || || ||||| Sbjct 32272 AGTGCCCCGGTCTCGCTGATGTCTACGGCGACGAGTTCGAGGCTCTCTACGAGAAGTACG 32331 Query 53805 CAGTTCAGGGCCGCTACAAGAAGAA-GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863 | |||| || | | | ||| |||||||| | || | ||| | || | ||| Sbjct 32332 AGCGTGAGGGTCG-TGCTCGCCGAACCGTCAAGGCTCAAAAGCTTTGGTACGCCGTTCTC 32390 Query 53864 AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923 || ||| |||||| || | || | |||| |||||||| | | ||| ||| Sbjct 32391 GAGGCTCAGACGGAGACTGGCAACCCTTTCATGCTTTACAAGGACGCTGCTAACCGCAAG 32450 Query 53924 AGCAACCAGAAGAACATCGGCGTCATCAA 53952 ||||| |||||| ||||| |||||| Sbjct 32451 TCGAACCAAAAGAACCTCGGCACCATCAA 32479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/204 (71%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAGT 55786 |||||| | ||| ||| ||||||||||| | |||||| ||| | || |||||| | Sbjct 33250 TCAAGGCACTGTACAAGACAGTGTGGGAGATCTCGCAGAAG-GTCATCATCGACATGGCT 33308 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGA-GAATCC 55845 || || || ||||| | ||| ||| || || |||||||||| | | | | | || Sbjct 33309 GCCGACCGAGGTGCCTTTATCTGCCAATCTCAAAGTCTGAACATCCACCTCCAAGCACCC 33368 Query 55846 TTCACTGGCCAAGTT--GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 | |||||| || |||| |||||||| ||||| |||||||||||| | |||||| Sbjct 33369 AGCTTTGGCCAGCTTACGAGC---ATGCACTTCTACGGCTGGAAGAAGGGATTGAAGACG 33425 Query 55904 GG-TATGTACTATCTGCGGACCCG 55926 || | ||||| || || ||||| Sbjct 33426 GGAAACATACTACCTCCGAACCCG 33449 >seq221 Length=756399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/204 (73%), Gaps = 11/204 (5%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTG--GCCGCATCCTTGCCACC--TGCCAGCCGCGTTCCAAA 152084 ||||| ||||| || ||||| ||||| ||||||||||| || || || || || || Sbjct 523255 GTGAAAATGTAACG--AGCTGAGGCCGCGTCCTTGCCACCCATGGCA--CGAGTGCCGAA 523200 Query 152085 CTGTCC-AGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAAT 152143 ||| || | ||||| ||||| |||| ||||| ||||| ||| | |||||||||| Sbjct 523199 CTGACCGATAGGGC--GAGGATGTTGGCATTGTTCGCGCCGCAGAAGTCTTGAGCCAAAT 523142 Query 152144 TCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGT 152203 | ||||||||| |||||||| || ||||| || || || || ||||| | | | Sbjct 523141 TTACAATCGTGGATTGCAGACTTTGCTCGCCGTGATGGTATGCGGTGTGCTCGCCCACAT 523082 Query 152204 ATCCCGCCAACTGCGCCACCTTCA 152227 | || ||||| || || |||| || Sbjct 523081 AACCAGCCAATTGGGCAACCTGCA 523058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213496486800