Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq296 109 3e-19 seq2 109 3e-19 seq359 86.0 4e-12 >seq296 Length=257219 Score = 109 bits (120), Expect = 3e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | ||||| ||| || ||||| ||||| || || || Sbjct 193619 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCGGAT 193560 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| || || || ||||| || || | ||| |||||||| || || Sbjct 193559 AGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCTGGGGGG 193500 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || || || ||| | ||| ||||| | ||| || Sbjct 193499 ATGCCCTCCTTGTCTTGGATC-TTGGTCTTGACGTTGTCAATCGTGTCGGAGGACTCTAC 193441 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || | ||| || || || || || | || || ||||| ||||||||| |||| Sbjct 193440 CTCGAGGGTGATGGTCTTGCCTGTGAGTGTCTTGACAAAGATCTGCATGATGAT 193387 >seq2 Length=120822 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || |||||| |||||| || ||||| ||||| ||||| || || Sbjct 7053 AGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGG 7112 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || || || ||||||||||| || | |||||| Sbjct 7113 CCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCC 7172 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || || | || ||||| ||||||||| || | || Sbjct 7173 TTGTCCTGGATC-TTGGTCTTTACATTGTCGATCGTGTCGGAGCTCTCCACCTCAAGAGT 7231 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || ||||||||||| Sbjct 7232 GATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7270 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || |||||| |||||| || ||||| ||||| ||||| || || Sbjct 7281 AGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGG 7340 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || || || ||||||||||| || | |||||| Sbjct 7341 CCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCC 7400 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || || | || ||||| ||||||||| || | || Sbjct 7401 TTGTCCTGGATC-TTGGTCTTTACATTGTCGATCGTGTCGGAGCTCTCCACCTCAAGAGT 7459 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || ||||||||||| Sbjct 7460 GATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7498 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || |||||| |||||| || ||||| ||||| ||||| || || Sbjct 7509 AGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGG 7568 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || ||||| || || || |||||||| ||||| || | |||||| Sbjct 7569 CCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGATCCGGAGGAATGCCCTCC 7628 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || || | || |||||| |||||| ||||| | || Sbjct 7629 TTGTCCTGGATC-TTGGTCTTTACATTGTCGATCGTGTCTGAGCTCTCGACTTCGAGAGT 7687 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || |||||||| Sbjct 7688 GATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 7726 Score = 105 bits (116), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| |||||| ||||||||||||||| || || ||||| || || Sbjct 6826 AGACGGAGGACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGG 6885 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || || || || || || || || |||||||| || | |||||| Sbjct 6886 CCGTCTTCGAGCTGCTTGCCCGCGAAGATCAATCGTTGCTGGTCCGG-GGGATGCCCTCC 6944 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || || || || | ||| |||||| ||||| || | || Sbjct 6945 TTGTC-CTGAATCTTCGTCTTGACATTGTCAATGGTGTCTGATGATTCCACCTCGAGTGT 7003 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || ||||||||||| Sbjct 7004 GATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 7042 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| || ||| ||||||||| ||||| || || || || || || Sbjct 12779 AGACGGAGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGT 12720 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || ||||| || || || || ||||||||||| || | |||||| Sbjct 12719 CCGTCTTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCC 12660 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || || || || | || |||||| ||| ||||| | ||| Sbjct 12659 TTGTC-CTGAATCTTGGTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCAAGGGT 12601 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || |||||||| Sbjct 12600 GATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12562 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || ||| ||||||||| ||||| ||||| ||||| || || |||| || Sbjct 11858 ACCAAGTGCAGTGTGGACTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCG 11799 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || ||||| || || | ||||| |||||||| || | |||||||||||| | Sbjct 11798 AGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGG 11739 Query 34618 ATCTT 34622 ||||| Sbjct 11738 ATCTT 11734 Score = 91.5 bits (100), Expect = 9e-14 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || ||||| || || || || || || |||| || | || Sbjct 12308 TGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAACTGC 12249 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||||||||||| || | |||||||||||| |||| || Sbjct 12248 TTGCCGGCGAAGATGAGGCGCTGTTGGTCCGG-GGGATACCCTCCTTGTCTTGGATC-TT 12191 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || |||||| | ||| ||||| | || || || || ||||| Sbjct 12190 CGTCTTCACGTTGTCGATCGTGTCTGAGGACTCGACTTCAAGAGTGATTGTCTTGCCGGT 12131 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | ||| || || || |||||||| Sbjct 12130 GAGCGTCTTGACGAAGATCTGCAT 12107 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| || ||||| ||||| ||||| || || Sbjct 12551 AGACGAAGAACCAAGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 12492 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || ||||| || || | ||||| |||||||| || | |||||| Sbjct 12491 CCGTCCTCCAACTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCC 12432 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || ||| | || |||||| ||||| || | || Sbjct 12431 TTGTCCTGGATC-TTCGTCTTCACGTTGTCGATAGTGTCTGATGATTCCACCTCGAGTGT 12373 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || |||||||| Sbjct 12372 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 12334 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA- 34538 || || | ||| || | ||||| || | ||| |||||| || ||||| || || || Sbjct 12105 CCACCACGAAGGCGGAGAACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAGTCGGAG 12046 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| ||||| |||| || || || || ||||| || || | ||||| |||||||| || Sbjct 12045 AAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGAGG 11986 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| || || || || | || |||||| || | Sbjct 11985 GATGCCCTCCTTGTCTTGGATC-TTGGTCTTGACATTGTCGATCGTGTCTGATGATTCAA 11927 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || || ||||| | || || || || |||||||| Sbjct 11926 CTTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 11878 >seq359 Length=210429 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || |||||| |||||| || ||||| || || || || || || |||| || Sbjct 42513 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCG 42454 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || ||||| || || | ||||||||||||||| || | || |||||||| | Sbjct 42453 AGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGGATACCTTCCTTGTCCTGG 42394 Query 34618 ATCTT 34622 ||||| Sbjct 42393 ATCTT 42389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728196109278