Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq312 118 9e-22 seq327 105 6e-18 >seq2 Length=120822 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| |||| ||||| ||||| || || Sbjct 7726 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTCGAAGTCGAGAGCTCA 7667 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || ||||| || || |||||| Sbjct 7666 GACACGATCGACAATGTAAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAA 7607 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||| || ||||| || | ||| |||||||||||||| Sbjct 7606 CAGCGATTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCCGATTACAAC 7547 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || ||||| | ||| | || ||||| || Sbjct 7546 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTCCGTCTCCGCGGTGGTAT 7497 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || |||||||| ||||| ||| Sbjct 7270 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTGGAGAGCTCC 7211 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || ||||| || || || ||| Sbjct 7210 GACACGATCGACAATGTAAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAA 7151 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||||||| || ||||| || | ||| |||||||||||||| Sbjct 7150 CAACGATTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCCGATTACAAC 7091 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || ||||| | ||| | || ||||| || Sbjct 7090 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTCCGTCTCCGCGGTGGTAT 7041 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || |||||||| ||||| ||| Sbjct 7498 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTGGAGAGCTCC 7439 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || ||||| || || || ||| Sbjct 7438 GACACGATCGACAATGTAAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAA 7379 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||||||| || ||||| || | ||| |||||||||||||| Sbjct 7378 CAACGATTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCCGATTACAAC 7319 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || ||||| | ||| | || ||||| || Sbjct 7318 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTCCGTCTCCGCGGTGGTAT 7269 Score = 132 bits (146), Expect = 4e-26 Identities = 167/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || |||||| | || Sbjct 7042 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACACTCGAGGTGGAATCATCA 6983 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| || ||||| || || || || Sbjct 6982 GACACCATTGACAATGTCAAGACGAAGATTCAGGACAAGGAGGGCATCCC-CCGGACCAG 6924 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| ||||| || | |||||| | ||| |||| || |||||| Sbjct 6923 CAACGATTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCGGACTACAAC 6864 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||||||||| || | |||||||| | ||| | || |||||| Sbjct 6863 ATTCAAAAGGAGTCCACTCTTCATTTGGTCCTCCGTCTCCGTGGTGGC 6816 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || |||||||| |||||| | || || ||||| || || | || ||| | ||||| Sbjct 11662 GTTAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCTTCAGACACCATTGAC 11721 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || |||||||| || ||||| || || || || ||||| | || Sbjct 11722 AATGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTCATC 11781 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||||||||| ||| | || ||| | ||| |||||||||||||||| ||||||||| Sbjct 11782 TTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTTTCCGATTACAACATCCAAAAGGAG 11841 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | || ||||| | || |||| ||||| || Sbjct 11842 TCCACACTGCACTTGGTCCTCCGCCTGCGTGGTGGTAT 11879 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || |||||| | || Sbjct 12334 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACACTCGAGGTGGAATCATCA 12393 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 12394 GACACTATCGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 12453 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || ||||| ||| | || |||| ||||||||| Sbjct 12454 CAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTTTCTGATTACAAC 12513 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||||| | ||| |||| ||||| || Sbjct 12514 ATCCAGAAGGAGTCAACGCTTCACTTGGTTCTTCGTCTGCGCGGTGGTAT 12563 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || ||||||||||| || | || Sbjct 12107 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACAATCACTCTTGAAGTCGAGTCCTCA 12166 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || |||||||| || || || || || || ||| Sbjct 12167 GACACGATCGACAACGTGAAGACGAAGATCCAAGACAAGGAGGGTAT-CCCCCGGACCAA 12225 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || ||||| ||| | ||| | ||||| |||||| Sbjct 12226 CAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACCCTCTCCGACTACAAC 12285 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | ||| | ||| | || ||||| || Sbjct 12286 ATCCAGAAGGAGTCCACACTTCACCTTGTTCTCCGTCTCCGCGGTGGTAT 12335 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || |||||||| || | || Sbjct 12562 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAAGTCGAGTCTTCA 12621 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| ||||| || ||||| || || || ||| Sbjct 12622 GACACCATCGACAATGTGAAGACCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAA 12681 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||||||| || | |||||| | || | || || |||||| Sbjct 12682 CAACGATTGATCTTCGCCGGCAAGCAGCTCGAAGACGGACGTACTCTCTCTGACTACAAC 12741 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||||||||| || | |||||||| | ||| | || |||||| Sbjct 12742 ATCCAAAAGGAGTCCACACTTCATTTGGTCCTCCGTCTCCGCGGTGGC 12789 >seq312 Length=215048 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| || ||| |||| || || || ||||| | || Sbjct 143487 CATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 143546 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||| || || ||||| ||||| || ||||| ||||| || ||||| || || Sbjct 143547 CGACTCCATCGACGCCGTCAAGACCAAAATCCAGGACAAGGAAGGTATCCCACCGGACCA 143606 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | || ||| | || |||| || ||||| Sbjct 143607 ACAGCGACTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCGGACTACAA 143666 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 143667 CATCCAGAAGGAGTCGAC 143684 >seq327 Length=173597 Score = 105 bits (116), Expect = 6e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || ||||||||||| || | || Sbjct 94345 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGGCCATCACTCTTGAAGTCGATTCATCA 94404 Query 27048 GACTCGATTGA-GATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| || | || || || || || || ||||| ||||||| || || || || Sbjct 94405 GATACGATCGACAACGGCCAGAC-CAAGATCCAGGACAAGGAAGGCACCCCTCCGGACCA 94463 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| ||| | || ||| | ||| | ||||| ||||| Sbjct 94464 ACAGCGCCTTATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCTCCGACTACAA 94523 Query 27167 CATTCAAAAGGAGTC 27181 ||| || || ||||| Sbjct 94524 CATCCAGAAAGAGTC 94538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916410248320