Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689995.1_202016-07-20] 366 sequences; 37,460,344 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 >seq2 Length=120822 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||||||||||| || | | Sbjct 7726 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACTCTCGAAGTCGAGAGCTCA 7667 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || | | ||||| || || | || || ||||| Sbjct 7666 GACACGATCGACAATGTAAAGACCAAGA-TCCAGGACAAGGAGGGCATTCCTCCGGATCA 7608 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || |||||||| || |||| || | ||||| | ||||||||| Sbjct 7607 ACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCCGATTACAA 7548 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 7547 CATCCAGAAGGAGTCCAC 7530 Score = 109 bits (120), Expect = 4e-19 Identities = 155/212 (73%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| ||||| || || || | Sbjct 7042 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACACTCGAGGTGGAATCATCA 6983 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || || || ||| ||||| || || | || || || || Sbjct 6982 GACACCATTGACAATGTCAAGAC-GAAGATTCAGGACAAGGAGGGCAT-CCCCCGGACCA 6925 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTAC 23787 || || || || || || ||||| || || ||||||| |||| |||| | || ||| Sbjct 6924 GCAACGATTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCG--GACTAC 6867 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||| |||||||| | ||||| || Sbjct 6866 AACATTCAAAAGGAGTCCACTCTTCATTTGGT 6835 Score = 102 bits (112), Expect = 6e-17 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||||||||| || | Sbjct 11878 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACACTCGAAGTTGAATCATCA 11937 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || || ||||| || || | || || || || Sbjct 11938 GACACGATCGACAATGTCAAGAC-CAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCA 11996 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA-CTTTAGGCGATTACA 23788 ||||| | || || ||||| || || || || |||| || | | || ||| |||| Sbjct 11997 GCAGCGCCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTTCTCCGACTACA 12056 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || || ||||||||||| || || ||| Sbjct 12057 ACATCCAGAAGGAGTCCACATTGCACTTGGTT 12088 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || |||||||| || || || | | Sbjct 7270 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTGGAGAGCTCC 7211 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || | | ||||| || || | || || || || Sbjct 7210 GACACGATCGACAATGTAAAGACCAAGA-TCCAGGACAAGGAGGGCATTCCTCCGGACCA 7152 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || || |||||||| || |||| || | ||||| | ||||||||| Sbjct 7151 ACAACGATTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCCGATTACAA 7092 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 7091 CATCCAGAAGGAGTCCAC 7074 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || |||||||| || || || | | Sbjct 7498 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTGGAGAGCTCC 7439 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || | | ||||| || || | || || || || Sbjct 7438 GACACGATCGACAATGTAAAGACCAAGA-TCCAGGACAAGGAGGGCATTCCTCCGGACCA 7380 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || || |||||||| || |||| || | ||||| | ||||||||| Sbjct 7379 ACAACGATTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCCGATTACAA 7320 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 7319 CATCCAGAAGGAGTCCAC 7302 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23622 CGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA 23681 |||||| || || || || || || ||||| || || ||||| || | ||||| |||| Sbjct 11661 CGTTAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCTTCAGACACCATTGA 11720 Query 23682 -AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAA 23740 ||| | || || || | | ||||| || || | || || || || ||||| | | Sbjct 11721 CAATGTCAAGACCAAGA-TCCAAGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTCA 11779 Query 23741 TATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAG 23800 | || |||||||| ||||| || |||| ||||| | |||||||||||| ||||| | Sbjct 11780 TCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTTTCCGATTACAACATCCAAAAGG 11839 Query 23801 AGTCCACATTACATTTAGT 23819 |||||||| | || || || Sbjct 11840 AGTCCACACTGCACTTGGT 11858 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || || | Sbjct 12334 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACACTCGAGGTGGAATCATCA 12393 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || | || || || | | ||||| || || | || || || || Sbjct 12394 GACACTATCGACAACGTGAAGACGAAGA-TCCAGGACAAGGAGGGCATTCCTCCGGACCA 12452 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || |||| |||| |||||| | |||||||| Sbjct 12453 GCAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTTTCTGATTACAA 12512 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 12513 CATCCAGAAGGAGTCAACGCTTCACTTGGTT 12543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008092265928