Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20walkeri_20[genbank_20GCA_5F001645055.1_202016-05-16] 972 sequences; 24,344,748 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq866 113 4e-20 seq445 93.3 4e-14 >seq866 Length=73677 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| |||||||| ||||||||||| |||||| | |||| ||| ||| Sbjct 71461 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCG 71402 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||| ||||| || ||||| ||||| ||||| || ||||| || Sbjct 71401 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTC-CTG 71343 Query 139676 ATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || || || | | || | ||||| | | |||||||||| || | ||||| Sbjct 71342 AATCTTCGTCTTGACATTGTCGATGGTGTCTGATGATTCCACCTCAAGAGTGATGGTCTT 71283 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| || | ||| || ||||| || |||||| Sbjct 71282 GCCAGTGAGCGTCTTGACGAAGATCTGCATA 71252 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | || ||||| | || ||||| ||||||||||| || || Sbjct 66128 TGGCCACCGCGGAGACGGAGGACCAAGTGCAGTGTGGACTCCTTTTGAATGTTGTAGTCC 66187 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| ||| || | ||| || || || |||||| || || || || ||| Sbjct 66188 GACAGGGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGA 66247 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | ||||| || | | || | ||||| | | ||| Sbjct 66248 GGAATGCCCTCCTTGTC-CTGAATCTTTGTCTTGACATTGTCGATGGTGTCTGATGACTC 66306 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| | || | ||||||||||| | || || || || ||||||||| Sbjct 66307 CACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATA 66358 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || ||||||| || ||||| ||||||||||| |||||| Sbjct 71710 TGGCCACCACGCAGGCGGAGGACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCG 71651 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| || || | ||| || || || |||||| ||||| || || ||| Sbjct 71650 GAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGA 71591 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || || | | || | ||||||| | ||| Sbjct 71590 GGAATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTATCAATGGTGTCGGATGATTCC 71531 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | ||||||||||| | || || ||||| || |||||| Sbjct 71530 ACCTCGAGTGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 71480 >seq445 Length=91251 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||| | || || |||||||| ||||| || ||| Sbjct 7710 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGG-- 7653 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | | ||| |||||||||||| || || || |||| |||||||| || || || | Sbjct 7652 ATAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCTGGGG 7593 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| || ||||| ||| || || | | || | ||||||| || ||| | Sbjct 7592 GGATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAGGACTCTA 7533 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | |||||||| || | || || ||||| || ||||| Sbjct 7532 CCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 7484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057972822400