Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20walkeri_20[genbank_20GCA_5F001645055.1_202016-05-16] 972 sequences; 24,344,748 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq866 91.5 1e-13 >seq866 Length=73677 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| || | |||| ||||||||| | ||||||||||| Sbjct 71708 GCCACCACGCAGGCGGAGGACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGA 71649 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || ||||| || |||||||| || |||||||| ||||| || | || Sbjct 71648 AAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGG 71589 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | ||| |||||| | || || Sbjct 71588 AATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTATCAATGGTGTCGGATGATTCCAC 71529 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || || || || || ||||| Sbjct 71528 CTCGAGTGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71481 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | ||| ||||||||| | ||||| || |||| || || |||| ||| Sbjct 66149 ACCAAGTGCAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCC 66208 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 || || |||||||| || |||||||||||||| || | || | || || || || ||| Sbjct 66209 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTC-CTG 66267 Query 43021 ATCAACTCT---TTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 | | || | ||||| || | | ||||| | ||| || || | || || || Sbjct 66268 A--ATCTTTGTCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCGAGTGTGATGGTC 66325 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || || || ||||| |||||||| Sbjct 66326 TTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 66357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381365082200376