Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20walkeri_20[genbank_20GCA_5F001645055.1_202016-05-16] 972 sequences; 24,344,748 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq866 116 9e-21 seq611 100 7e-16 >seq866 Length=73677 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || ||||| || || || || || || | ||||| || || || ||||| Sbjct 71449 GTAGACTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 71390 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||||||| ||||| || || || || ||||||||||| | || Sbjct 71389 GCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGTCTTG 71330 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | ||| ||||| || || || ||||| ||||| || || Sbjct 71329 ACATTGTCGATGGTGTCTGATGATTCCACCTCAAGAGTGATGGTCTTGCCAGTGAGCGTC 71270 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 71269 TTGACGAAGATCTGCAT 71253 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| || || ||||| || || || || || || || | ||||| || ||||| Sbjct 66611 TGCAATGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCGAGTTGC 66670 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| || || || || | ||| || || || || || || || || ||||||||||| Sbjct 66671 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTG 66730 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | ||||| || || | ||| || | || ||||| ||||| || ||||| || || Sbjct 66731 GTCTTTACGTTGTCGATGGTGTCTGATGACTCCACCTCGAGTGTGATTGTCTTGCCGGTG 66790 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || || |||||||| Sbjct 66791 AGGGTCTTGACGAAGATCTGCAT 66813 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || || || ||||| || ||||| || || || | ||||| || | || || || Sbjct 66160 TGTGGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAACTGCTTGCC 66219 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || || || | | |||||| || ||||| || || || || ||||||||||||| || Sbjct 66220 GGCGAAGATCAATCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGTCTT 66279 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | || ||||| ||||| || ||||| || || || || Sbjct 66280 GACATTGTCGATGGTGTCTGATGACTCCACCTCGAGTGTGATGGTCTTGCCGGTGAGGGT 66339 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 66340 CTTGACAAAGATTTGCAT 66357 >seq611 Length=85925 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| || ||||| | ||||| Sbjct 39111 AAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTC 39052 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | |||||| || || || || ||||| || || Sbjct 39051 CTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATACCTTCCTTGTC 38992 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| || | || || || | || ||| || || ||||| || || ||||| Sbjct 38991 CTGAATTTTGGTCTTGACGGCGTCGATGGAGTCGGAAGACTCCACCTCGAGGGTGATAGT 38932 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || || |||||||| Sbjct 38931 CTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 38899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151384060772176