Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20walkeri_20[genbank_20GCA_5F001645055.1_202016-05-16] 972 sequences; 24,344,748 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq866 111 1e-19 >seq866 Length=73677 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || |||||| |||||||||||||||||| || | || || |||||||| Sbjct 66149 ACCAAGTGCAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCC 66208 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | |||||| ||| || | || || ||||| || ||| || | | ||||||||| | Sbjct 66209 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 66268 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | ||||| || | |||||| ||||| ||| ||||| || Sbjct 66269 ATCTTTGTCTTGACATTGTCGATGGTGTCTGATGACTCCACCTCGAGTGTGATGGTCTTG 66328 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || ||||| || ||||| Sbjct 66329 CCGGTGAGGGTCTTGACAAAGATTTGCAT 66357 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || ||||||||||||||||||||| | | || ||||||| Sbjct 71461 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCG 71402 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || | |||||| |||||| || | | ||||||||| | Sbjct 71401 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGA 71342 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| ||||| | | ||||| || | || ||| ||| | || ||||| || Sbjct 71341 ATCTTCGTCTTGACATTGTCGATGGTGTCTGATGATTCCACCTCAAGAGTGATGGTCTTG 71282 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || || |||||||| Sbjct 71281 CCAGTGAGCGTCTTGACGAAGATCTGCAT 71253 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| ||||||||||||||||||||| | || || || | ||||| Sbjct 71689 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATC-GGAAAGGGTGCGGCCATCCTC 71631 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| ||| || | || || || || || ||| || | | ||||||||| Sbjct 71630 CAACTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTG 71571 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||||| | ||||| |||| || ||| ||||| ||| || || || Sbjct 71570 GATCTTCGTCTTGACGTTATCAATGGTGTCGGATGATTCCACCTCGAGTGTGATAGTCTT 71511 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || || |||||||| Sbjct 71510 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 71481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || || | |||| |||||| || ||||||||||| | || || || ||||||| Sbjct 66605 ACCAAGTGCAATGTGGACTCCTTCTGGATGTTGTAATC-GGAAAGGGTGCGGCCGTCCTC 66663 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| ||| || | || | |||||||| ||| || | || ||||||||| Sbjct 66664 GAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 66723 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| | | | || ||||| || | |||||| ||||| ||| || || Sbjct 66724 AATCTTGGTCTTTACGTTGTCG--ATGGTGTCTGATGACTCCACCTCGAGTGTGATTGTC 66781 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || || |||||||| Sbjct 66782 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 66813 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| ||||||||| ||||||||||||| | | || || ||||||| ||||| Sbjct 66839 TGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGAAAGAGTG-CGGCCGTCCTCAAGCTG 66897 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||| ||| || | || ||||||||| || || Sbjct 66898 CTTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 66957 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||| | | | || || || || | ||||| || | || || || || ||| Sbjct 66958 CGTCTTCACGTTGTCG--ATCGTGTCTGATGACTCAACTTCCAGCGTGATTGTCTTGCCG 67015 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || |||||||||||||| Sbjct 67016 GTGAGGGTCTTGACAAAAATCTGCAT 67041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246209752972