Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20walkeri_20[genbank_20GCA_5F001645055.1_202016-05-16] 972 sequences; 24,344,748 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq356 172 8e-37 seq116 104 3e-16 seq149 96.9 5e-14 seq2 91.5 2e-12 >seq356 Length=94465 Score = 172 bits (190), Expect = 8e-37 Identities = 221/297 (74%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||| ||||| || || ||||| ||||| |||||||| ||| | ||||| | Sbjct 85292 GAGAACATTCACTCCGAGACATACTCCCTCCTCATCGACACATACATTCGCGACCCCGCA 85233 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAGGCCGA 1456133 || || ||||||| |||||| || || | || |||| | | | |||||||||| Sbjct 85232 CAGCGCGAGTACCTCTTCGACGCCATGGAGACCATTCCCGTCG-TCAAGCAAAAGGCCGA 85174 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 ||||| || ||||||||| | |||| | || || ||||||||||| || || | | Sbjct 85173 GTGGGCCCTGCGCTGGATCAACGACGAGGAC-TCCACT-TTTGCCGAGCGCCTGGTTGCC 85116 Query 1456194 TTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| || || ||||||||||| ||||| ||| |||| | ||||||| ||||||||| Sbjct 85115 TTTGCTGCCGTAGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAG 85056 Query 1456253 AAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||| || ||||||||||||| || ||| |||||| | ||||| || ||||| Sbjct 85055 AAGCGTGGTCTCATGCCCGGTC-TCACCTTCTCCAACGAGCTCATCAGCCGAGACGA 85000 Score = 125 bits (138), Expect = 1e-22 Identities = 172/237 (73%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| || || ||||| ||||||||| |||||| Sbjct 85609 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCATCGTTCTGGACTGCCGAGGAGATCGACC 85551 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | |||| | | |||||| | ||| |||| ||||||| || ||||||| Sbjct 85550 TCTCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAACGAGCGACACTTCATCA 85491 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||| || ||| ||||| ||||||||||| ||||||||| | || Sbjct 85490 GCCACGTCCTCGCATTCTTT-GCCGCGTCAGATGGCATCGTCAACGAGAACCTCGTCGAG 85432 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | ||||||||| ||||||| || | || ||||| ||||| ||| Sbjct 85431 CGGTTCAGCTCAGAGGTCCAGGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAAATC 85375 >seq116 Length=43932 Score = 104 bits (114), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||||||||||||| || | | ||| || |||||| | Sbjct 34859 ATCTACCGTGTCCTCAAGCAGGTGCACCCCGACACTGGT-----ATC-TCAAACAAGGCT 34912 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| ||||||| || ||| | ||||| |||| ||||||| |||||||| Sbjct 34913 ATGGCCATCCTGAACTCCTTCGTCCAAGACATCTTCGAGCGCATCGCATCCGAGGCCTCC 34972 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || ||||||| || ||| | ||||||||||| ||||| || Sbjct 34973 AAGCTTGCATCCTACAACAAGAAGTCGACCATCTCTGCCCGCGAGATCCAAACCGCTGTC 35032 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | ||| ||||| ||| ||||||| |||| ||||| |||| Sbjct 35033 CGACTTATCCTCCCCGGTGAACTCTCCAAGCACGCCATCTCTGAGGGTACCA 35084 >seq149 Length=37758 Score = 96.9 bits (106), Expect = 5e-14 Identities = 195/279 (70%), Gaps = 14/279 (5%) Strand=Plus/Plus Query 1816145 CGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCG 1816203 || ||||| ||||| || |||| |||| |||||||| |||||||||| || |||||||| Sbjct 20376 CGTCGCTGAATGTAACC-CGTCTCGGCCGTCTTGACAGCCGTGTCGATGAGACCCTCGCG 20434 Query 1816204 GCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCG 1816263 || | || ||| || || | ||| | | |||| || ||| ||||||||| Sbjct 20435 ACCCGCCATGGCGTGGAAGAAGAACTCCTGTGCCGTGAGACCTCGCAAGTACGAGTTCTC 20494 Query 1816264 CACAAAGCCGCGGCTCTCGGG-CGGCGGCACGGCCTCGGCGTGCCGGTAGCAGC--CCAG 1816320 |||||||||||| |||||||| | | | || ||| | | || ||||| || | Sbjct 20495 CACAAAGCCGCGACTCTCGGGACTGAAG-TCGTCCTTTGTG-AAATGTGGCAGCGTCCGG 20552 Query 1816321 TGTGCGCGAACCCGACTCGGAGTGGATGCGCTGGCCCTCATTGCTCTGCTGGCCCACGCA 1816380 | | || |||||||| || | | |||| |||||| | |||||||||| || || Sbjct 20553 TAT-CG-GAACCCGA-----AGGGCACACGCTTGCCCTCGACGATCTGCTGGCCGACACA 20605 Query 1816381 GCCGCACATCTGGGTGATGTTAAAGACGCTACCCTTGGA 1816419 || ||||||||| |||||| | || |||||| || Sbjct 20606 AGCGGACATCTGGGAGATGTTGATGAACGAACCCTTCGA 20644 >seq2 Length=141261 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||| || |||||| || | | ||| || |||||| || Sbjct 53961 ATCTACCGTGTCCTCAAGCAAGTCCACCCCGACACTGGT-----ATC-TCAAACAAGGCC 53908 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | ||||| || || | ||||| |||| ||||||| |||| || Sbjct 53907 ATGGCCATCCTCAACTCCTTCGTACAAGACATCTTCGAGCGCATCGCATCCGAAGCTTCC 53848 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || | ||||||| | ||| ||| | | ||||||||||| || ||||| Sbjct 53847 AAACTCGCATCATACAACAAGAAGAGCACCATCTCCGCACGCGAGATCCAAACAGCCGTC 53788 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | ||| ||||| ||| ||||||| |||| ||||| |||| Sbjct 53787 CGACTCATCCTTCCCGGTGAACTCTCCAAGCACGCCATCTCGGAGGGGACCA 53736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177717448813464