Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq24 109 1e-18 >seq24 Length=169626 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||||| || || ||| | ||||| ||||| |||||||| ||||| | Sbjct 83796 CTCATCGGCATGAACGCCGACCTCATGTGCCAGTATATCGAGTTCGTAGCGGACCGTCTG 83737 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || || || ||||||| ||| | | | |||||| || | || ||||| Sbjct 83736 CTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCCACGAACCCGTTCGACTTCATGGAC 83677 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTC 230610 ||||| ||||| || || ||||||||||||||||| || || ||| Sbjct 83676 CTCATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAACGCGTC 83632 Score = 96.9 bits (106), Expect = 7e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 230428 GACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487 ||||| | |||||| ||| || ||||||||| | | || ||| | ||||||||||| Sbjct 86687 GACGCGCTCCCATGTGCCCTCATCGGCATGAACTCGAAGCTCATGTGCCAGTACATCGAG 86746 Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547 ||||| || || || || | || || || || | ||||| |||||| | ||| Sbjct 86747 TTCGTCGCTGATCGTCTTCTCGTCGCTCTCGGCGATGAGAAGTACTACAACGTGACCAAC 86806 Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607 || || | || ||||| | || ||||| || || ||||| ||||||||||| ||||| Sbjct 86807 CCGTTCGATTTCATGGACATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGCGG 86866 Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGA 230635 || |||||| || | ||||||| Sbjct 86867 GTGTCCGACTATTCGAAAGCGGGTGTGA 86894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057813482584880